Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30003.m000340 |
Family | CBM43 |
Protein Properties | Length: 457 Molecular Weight: 50826.1 Isoelectric Point: 10.4297 |
Chromosome | Chromosome/Scaffold: 30003 Start: 132368 End: 134489 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 373 | 454 | 3.8e-32 |
WCVPKTGANDQALQANINYACSQGVDCRPIQAGGACFDPNNVRSHASFIMNSFYQTHGRQDFACDFAHTGFLTSLNPSHGAC | |||
GH17 | 27 | 340 | 0 |
IGVNYGTLGNNLPPPSQVAKFIKTQTIIDSIKIFDTNPDVLRAFANTGISVTVTVGNGDIPALANINNARRWVVANIAPFYPRTRINRIVVGNEILASAN KAWITNLVPAMRNIHNALLSARIRGIQVTTPNSLGILSISEPPSAGRFRNGFDRVIFAPMLQFLRETKSPFMVNPYPYFGYFPQMANYALFKRNRGIHDR FTGITYYNMYDAMLDVVYSAMKKLGYGDVGIVVGETGWPSLCDPGQPACSVENAAWFNGNLVRRDHQRRGTPLMPNRRFETFIFSLFNENLKPGPTAERN WGLFRPDFSPVYNI |
Full Sequence |
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Protein Sequence Length: 457 Download |
MTTKTHHRHL LLLISTFFHL STTIFAIGVN YGTLGNNLPP PSQVAKFIKT QTIIDSIKIF 60 DTNPDVLRAF ANTGISVTVT VGNGDIPALA NINNARRWVV ANIAPFYPRT RINRIVVGNE 120 ILASANKAWI TNLVPAMRNI HNALLSARIR GIQVTTPNSL GILSISEPPS AGRFRNGFDR 180 VIFAPMLQFL RETKSPFMVN PYPYFGYFPQ MANYALFKRN RGIHDRFTGI TYYNMYDAML 240 DVVYSAMKKL GYGDVGIVVG ETGWPSLCDP GQPACSVENA AWFNGNLVRR DHQRRGTPLM 300 PNRRFETFIF SLFNENLKPG PTAERNWGLF RPDFSPVYNI GIMHNGQPIG GRHGGRNRRG 360 PRPAPRVGGG KRWCVPKTGA NDQALQANIN YACSQGVDCR PIQAGGACFD PNNVRSHASF 420 IMNSFYQTHG RQDFACDFAH TGFLTSLNPS HGACRYL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-23 | 373 | 442 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-41 | 373 | 456 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-94 | 27 | 340 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95730.1 | 0 | 11 | 456 | 13 | 447 | unknown [Populus trichocarpa] |
RefSeq | XP_002312097.1 | 0 | 11 | 456 | 13 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002312098.1 | 0 | 22 | 457 | 25 | 454 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530862.1 | 0 | 2 | 450 | 3 | 439 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
RefSeq | XP_002530863.1 | 0 | 1 | 457 | 1 | 457 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 27 | 340 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 27 | 340 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 27 | 340 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 27 | 340 | 2 | 313 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 27 | 340 | 2 | 313 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |