Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F02980.2 |
Family | GH116 |
Protein Properties | Length: 868 Molecular Weight: 96254.5 Isoelectric Point: 6.5741 |
Chromosome | Chromosome/Scaffold: 6 Start: 39436619 End: 39447064 |
Description | Beta-glucosidase, GBA2 type family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH116 | 520 | 848 | 0 |
GQFLYLEGNEYLMWNTYDVHFYSSFALIMLYPKLELSIQRDFAAAVMLHDPQKRKIMSDGKWVPRKVLGAVPHDIGLNNPWFEVNAYNLFNTDRWKDLNP KFVLQVYRDFIATGDLNFAKAVWPSVYTAMAYMDQFDKDGDGMIENEGFPDQTYDAWSVSGVSAYCGGLWVAALQAASAMAREVGDITSGNYFWVKYQKA KVVYDKLWNGCYYNYDDSGSSVSASIQADQLAGQWIARACGLLPIADSDKIRSALEKVFDFNVSKMKGGTRGAVNGMLPDGRIDMSAMQSREVWPGVTYS LAASMIQEGMMDMAFQTAAGVYEAAWSEK |
Full Sequence |
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Protein Sequence Length: 868 Download |
MENGIRENGE KDGSDDSSRH KVQPEEPAPL TWQRKLSCEG RTPSQFTLTL HEKLHLAPIG 60 VRLWHHSKQE AVHGRDTIFD FTKKRHVTGH QGVPLGGIGA GSIGRSYKGE FQRFQLFPKV 120 SEDVPILANQ FSVMVSRPNG KKFSTVLCPK TAGMPKGSRG SGTECWDWNL NGDKCTYHAL 180 FPRAWTICDG EPDPDLRIVT RQLSPIIPHN YKESSFPVSV FTFTVSNQGR TSADVSLLFT 240 WVNSVGGVSG FSGGHFNSNM ETTDGIHGIL LHHRTANGHP PVTFAIAAEE SSDVHISKCP 300 YFLISGTSHG FTAKDMWYAI KKNGSFDHTG QNDNLVPSEA GSSIGAAIAA SLVVPPGSVR 360 TVTFSLAWDC PEVRFDDNVY YRRYTKFYGT NGDAAAKIAR DAILEHTQWE SQIDAWQGPI 420 LHDRRLPSWY PVTLFNELYY LNSGGTIWTD GSPPVRNLLS GHVKFSLDQA KLGLKNEVGN 480 DTAVEIIERM ASTLSRIHGP LTSNTAFGTS LLQEGEENIG QFLYLEGNEY LMWNTYDVHF 540 YSSFALIMLY PKLELSIQRD FAAAVMLHDP QKRKIMSDGK WVPRKVLGAV PHDIGLNNPW 600 FEVNAYNLFN TDRWKDLNPK FVLQVYRDFI ATGDLNFAKA VWPSVYTAMA YMDQFDKDGD 660 GMIENEGFPD QTYDAWSVSG VSAYCGGLWV AALQAASAMA REVGDITSGN YFWVKYQKAK 720 VVYDKLWNGC YYNYDDSGSS VSASIQADQL AGQWIARACG LLPIADSDKI RSALEKVFDF 780 NVSKMKGGTR GAVNGMLPDG RIDMSAMQSR EVWPGVTYSL AASMIQEGMM DMAFQTAAGV 840 YEAAWSEKSL GLQKHGMKMM NSDQFVT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01561 | gde_arch | 0.004 | 604 | 750 | 173 | + glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
COG3408 | GDB1 | 0.0001 | 588 | 742 | 171 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
pfam12215 | GBA2_N | 2.0e-57 | 92 | 409 | 327 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
COG4354 | COG4354 | 1.0e-86 | 92 | 842 | 797 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
pfam04685 | DUF608 | 4.0e-154 | 520 | 853 | 338 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. |
Gene Ontology | |
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GO Term | Description |
GO:0004348 | glucosylceramidase activity |
GO:0006665 | sphingolipid metabolic process |
GO:0016021 | integral to membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI31319.1 | 0 | 1 | 864 | 1 | 870 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264575.1 | 0 | 2 | 863 | 3 | 870 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275782.1 | 0 | 1 | 864 | 17 | 886 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002325943.1 | 0 | 56 | 851 | 1 | 799 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525532.1 | 0 | 1 | 851 | 2 | 853 | conserved hypothetical protein [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY292040 | 319 | 533 | 851 | 0 |
FC917648 | 306 | 533 | 838 | 0 |
JG703027 | 314 | 538 | 851 | 0 |
FC895322 | 303 | 398 | 695 | 0 |
FC916205 | 304 | 465 | 764 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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