Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.009G010800.1 |
Family | CBM43 |
Protein Properties | Length: 444 Molecular Weight: 49047.9 Isoelectric Point: 8.2371 |
Chromosome | Chromosome/Scaffold: 09 Start: 864787 End: 867950 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 359 | 440 | 3.2e-32 |
CVPKVDVSNTQLQSNLDYACGQEGIDCTPIQPGGACYEPNTLRAHAAFAMNTYYRTKGESYFSCDFAGTGQITTVDPSYPNC | |||
GH17 | 21 | 335 | 0 |
IGVNYGMTADNLPPPSVVANFLKTQTIFDSVKLFDANPDVLRAFANTGISVSVTIGNGDIPGLTNTVTARRWVADHISPFHPQTKIKYICVGTEVLFSKN DVWINNLVPAMRSLHYALNKAGFQDIKVTSAHALNIFRRDTIPSLMRFMVGYDQSFFAPLLQFHQRTKSPFMVNPYPYFSPDITRRLNYALFKPNSGIYD KYTKKNYTNMFDSILDSTYTAMKALGYGNVEIAIGETGWPTQGDATSPFATMENAISYNGHVIKEIVSGKGTPLMPNRTFETYMFALFNENQKPGPLVEK YWGMFNPDLTPIYDV |
Full Sequence |
---|
Protein Sequence Length: 444 Download |
MTAVFILIGV LLQLFTATTG IGVNYGMTAD NLPPPSVVAN FLKTQTIFDS VKLFDANPDV 60 LRAFANTGIS VSVTIGNGDI PGLTNTVTAR RWVADHISPF HPQTKIKYIC VGTEVLFSKN 120 DVWINNLVPA MRSLHYALNK AGFQDIKVTS AHALNIFRRD TIPSLMRFMV GYDQSFFAPL 180 LQFHQRTKSP FMVNPYPYFS PDITRRLNYA LFKPNSGIYD KYTKKNYTNM FDSILDSTYT 240 AMKALGYGNV EIAIGETGWP TQGDATSPFA TMENAISYNG HVIKEIVSGK GTPLMPNRTF 300 ETYMFALFNE NQKPGPLVEK YWGMFNPDLT PIYDVGLLRR GQSAPTPATP APSSSKNFCV 360 PKVDVSNTQL QSNLDYACGQ EGIDCTPIQP GGACYEPNTL RAHAAFAMNT YYRTKGESYF 420 SCDFAGTGQI TTVDPSYPNC RFV* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-7 | 106 | 328 | 227 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 4.0e-21 | 359 | 428 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-40 | 358 | 442 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-88 | 21 | 335 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95730.1 | 0 | 5 | 442 | 13 | 447 | unknown [Populus trichocarpa] |
RefSeq | XP_002283647.1 | 0 | 5 | 443 | 11 | 446 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002312097.1 | 0 | 5 | 442 | 13 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002312098.1 | 0 | 15 | 443 | 24 | 454 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530862.1 | 0 | 16 | 436 | 23 | 439 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 21 | 335 | 1 | 304 | N Chain N, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 |
PDB | 1aq0_B | 0 | 21 | 335 | 1 | 304 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 21 | 335 | 1 | 304 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 21 | 335 | 2 | 313 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_C | 0 | 21 | 335 | 2 | 313 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |