Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G202900.2 |
Family | CBM43 |
Protein Properties | Length: 473 Molecular Weight: 50028.5 Isoelectric Point: 4.8285 |
Chromosome | Chromosome/Scaffold: 09 Start: 15732183 End: 15734745 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 384 | 465 | 4e-33 |
WCVPKKDVTDAELQASLDYACAHGIDCSPIQPGGSCFEPNTLSAHAAYAMNLYYQSSGPDPSSCDFSQAAMLSSSNPSYNGC | |||
GH17 | 28 | 346 | 0 |
IGVNYGQVADNLPSPAATAKLLQSTSIQKVRLYGSDAAMIKALANTGIGIVIGTANGDIPALASDPNFAKNWVDTNVVAYYPASKIILINVGNEVIMSGD NNLISQLLPAMQNVKNALDAASLGDKVKVSTVHSMTLLKQSEPPSSGSFDPAYGDMLKGVLAFNNATGSPFAINPYPFFAYRSDPRPETLAFCLFQPNSG RLDGNTKINYMNMFDAQVDAVRSALDAMGFKNVEIVVAETGWPYKGDSDEVGASIENAKAYNGNLIAHLRSMVGTPLMPGKSVDTYLFALYDENLKPGPT SERSFGLYQSADLTMTYDV |
Full Sequence |
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Protein Sequence Length: 473 Download |
MSALHFTVTF LLLTLLLEVN KAKSQSFIGV NYGQVADNLP SPAATAKLLQ STSIQKVRLY 60 GSDAAMIKAL ANTGIGIVIG TANGDIPALA SDPNFAKNWV DTNVVAYYPA SKIILINVGN 120 EVIMSGDNNL ISQLLPAMQN VKNALDAASL GDKVKVSTVH SMTLLKQSEP PSSGSFDPAY 180 GDMLKGVLAF NNATGSPFAI NPYPFFAYRS DPRPETLAFC LFQPNSGRLD GNTKINYMNM 240 FDAQVDAVRS ALDAMGFKNV EIVVAETGWP YKGDSDEVGA SIENAKAYNG NLIAHLRSMV 300 GTPLMPGKSV DTYLFALYDE NLKPGPTSER SFGLYQSADL TMTYDVGLSK SSSQAQTPAS 360 PATEKTPATL SVVAPSPEPK KASWCVPKKD VTDAELQASL DYACAHGIDC SPIQPGGSCF 420 EPNTLSAHAA YAMNLYYQSS GPDPSSCDFS QAAMLSSSNP SYNGCTFPGG ST* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-7 | 56 | 339 | 296 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 8.0e-24 | 383 | 454 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-40 | 383 | 467 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-94 | 28 | 346 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95331.1 | 0 | 4 | 471 | 1 | 455 | unknown [Populus trichocarpa] |
EMBL | CBI32582.1 | 0 | 4 | 469 | 35 | 489 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282736.1 | 0 | 1 | 472 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002509479.1 | 0 | 22 | 472 | 22 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
RefSeq | XP_002510373.1 | 0 | 4 | 471 | 5 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 28 | 335 | 1 | 300 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 28 | 335 | 3 | 302 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 28 | 335 | 3 | 302 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 28 | 335 | 3 | 302 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 28 | 335 | 3 | 302 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |