Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G239200.1 |
Family | CBM43 |
Protein Properties | Length: 241 Molecular Weight: 26184.8 Isoelectric Point: 6.9979 |
Chromosome | Chromosome/Scaffold: 10 Start: 60885969 End: 60892624 |
Description | glycosyl hydrolase family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 55 | 136 | 5.2e-28 |
WCIANPLASNSALAANIEYICSQLDCGSINPKGPCFEPNSRMHHASFAMNLYYQANGRHLADCNFINSGLVSLIDPSYGNCS | |||
CBM43 | 152 | 233 | 4.3e-28 |
WCVAKPGTSDELLQLNINFACNLVDCNATHSGGVCYYPATLINHASYAMNLYYQITGRKKSNCNFRETSLIVSSDPSYGNCS |
Full Sequence |
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Protein Sequence Length: 241 Download |
SVIKIKTLFS LTNIIPLCTK MAKPIGSTPI FSLFVMFSLL YSGSSQTIPN ERKTWCIANP 60 LASNSALAAN IEYICSQLDC GSINPKGPCF EPNSRMHHAS FAMNLYYQAN GRHLADCNFI 120 NSGLVSLIDP SYGNCSFHSG GGLADEEPSE TWCVAKPGTS DELLQLNINF ACNLVDCNAT 180 HSGGVCYYPA TLINHASYAM NLYYQITGRK KSNCNFRETS LIVSSDPSYG NCSYPCFTVQ 240 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 5.0e-9 | 54 | 119 | 72 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
pfam07983 | X8 | 4.0e-14 | 151 | 216 | 72 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-23 | 54 | 137 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
smart00768 | X8 | 3.0e-30 | 151 | 234 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN27897.1 | 8e-38 | 54 | 235 | 255 | 427 | unknown [Zea mays] |
RefSeq | NP_001151472.1 | 2e-37 | 54 | 235 | 391 | 563 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002519721.1 | 3e-17 | 34 | 131 | 93 | 190 | hypothetical protein RCOM_0633840 [Ricinus communis] |
RefSeq | XP_002519721.1 | 1.96182e-44 | 52 | 228 | 2 | 190 | hypothetical protein RCOM_0633840 [Ricinus communis] |
RefSeq | XP_002519722.1 | 0 | 27 | 234 | 4 | 216 | hypothetical protein RCOM_0633850 [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-24 | 151 | 235 | 12 | 97 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 2jon_A | 4e-23 | 48 | 140 | 6 | 99 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE255611 | 213 | 27 | 234 | 0 |
EE256344 | 155 | 85 | 234 | 0 |
EY745502 | 195 | 24 | 218 | 0 |
EY745502 | 99 | 136 | 234 | 1e-24 |
EE256344 | 85 | 53 | 137 | 9e-16 |
Sequence Alignments (This image is cropped. Click for full image.) |
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