Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00067089m |
Family | CBM43 |
Protein Properties | Length: 312 Molecular Weight: 32716.7 Isoelectric Point: 5.5633 |
Chromosome | Chromosome/Scaffold: 0202197 Start: 1 End: 1804 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 206 | 286 | 3.2e-31 |
WCVARDGASDAELQADLDYACAQVGVDCGAIQPGGACFEPNTVRAHATYAMNQLYQAAGRHPWNCDFRASATLTSDNPSKC | |||
GH17 | 1 | 183 | 0 |
MGVMAQSDPPSTGAFHPDIAPQLQGILGFLSKTGSPFMINPYPWFAYQSDPRPDTLAFCLFQPNAGRVDAGSKIKYTNMFDAQLDAVKSAMVRAGFGNVD IVVAETGWPTRGDAGEPGASVENARAYVSNLVAHLRSGAGTPLMPGKPVETYLFALYDEDLKPGPASERSFGLYHTDLSMAYD |
Full Sequence |
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Protein Sequence Length: 312 Download |
MGVMAQSDPP STGAFHPDIA PQLQGILGFL SKTGSPFMIN PYPWFAYQSD PRPDTLAFCL 60 FQPNAGRVDA GSKIKYTNMF DAQLDAVKSA MVRAGFGNVD IVVAETGWPT RGDAGEPGAS 120 VENARAYVSN LVAHLRSGAG TPLMPGKPVE TYLFALYDED LKPGPASERS FGLYHTDLSM 180 AYDAGLAAGA AAGAPAAGQP RAGGGWCVAR DGASDAELQA DLDYACAQVG VDCGAIQPGG 240 ACFEPNTVRA HATYAMNQLY QAAGRHPWNC DFRASATLTS DNPSKCTHAR PPAASPHLSI 300 PPRLTVMEPP GR |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 4.0e-8 | 57 | 177 | 124 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 9.0e-22 | 206 | 277 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-36 | 206 | 284 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-55 | 1 | 183 | 183 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN26761.1 | 0 | 1 | 284 | 26 | 312 | unknown [Zea mays] |
GenBank | EAY91326.1 | 0 | 1 | 284 | 164 | 454 | hypothetical protein OsI_12942 [Oryza sativa Indica Group] |
RefSeq | NP_001141090.1 | 0 | 1 | 284 | 26 | 313 | hypothetical protein LOC100273173 [Zea mays] |
RefSeq | NP_001148381.1 | 0 | 1 | 284 | 164 | 450 | glucan endo-1,3-beta-glucosidase 7 [Zea mays] |
RefSeq | XP_002466692.1 | 0 | 1 | 284 | 172 | 464 | hypothetical protein SORBIDRAFT_01g012380 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 2e-38 | 2 | 177 | 138 | 305 | A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii |
PDB | 3ur8_A | 2e-38 | 2 | 177 | 138 | 305 | A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii |
PDB | 3ur7_B | 2e-38 | 2 | 177 | 138 | 305 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 2e-38 | 2 | 177 | 138 | 305 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3f55_D | 1e-37 | 1 | 187 | 137 | 316 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE163333 | 266 | 1 | 263 | 0 |
EE152766 | 258 | 1 | 255 | 0 |
CB672196 | 252 | 40 | 284 | 0 |
EC876686 | 236 | 1 | 233 | 0 |
EE180047 | 236 | 1 | 233 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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