| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb01g019480.1 |
| Family | AA3 |
| Protein Properties | Length: 733 Molecular Weight: 79004.5 Isoelectric Point: 7.6106 |
| Chromosome | Chromosome/Scaffold: 1 Start: 21001846 End: 21019401 |
| Description | fatty alcohol oxidase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| AA3 | 213 | 728 | 2.8026e-45 |
| GAHHTVQCDVVIVGSGCGGGVAAAVLAAAGHKVIVVEKGDYFTAESYTSVEGPSMERLYEKGGIFCTSNVTTIMFTGATVGGGSAINWSASIRTPEWVTK EWARDHGLPVFGTPEYARAMDAVCARLAVTGGCRQEGFQNKALRRGCEALGLRGDAVPRNSSEGHFCGSCHLGCPTGEKRGTDTTWLVDAVDRGAVILTG CKAERFILESNPGGGGDNGRSKKCVGLVAACMSDGISKKLRIEAKVSISACGALMTPPLLRNSGLKNRHIGRNLHLHPVSMAWGYFPDGTPENAELSGKC YEGGIITTMHRVTARTIIQTPALGPGCWASLIPWESGRDMKERMLRYARTAHAFALVRDRGAGHVDGEGRVRYAPSREDVEELRNGLRQALRILVAAGAA EVGTHRSDGLRLRCDGGLRDEDLEAFLKEVTVGEGPMLPGPDKWALHCSAHQMGSCRMGCSPKDGAVDGRGESWEAEGLYVCDGSVLPTAVGVNPMITIQ STAYCVSKGIAESLAR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 733 Download |
| MEALRAMCGA LIPSLPVDPE GDQQQPARGK GHDDLERFYR ASAADGVIPD EVAEMVTRCV 60 WEAMLLMRVI LWMLSTRVGT LALCGRLCLC FSDNGKFFPF VCKFADMPVK RREQVLKRWS 120 KARWLFPLKI TFLIAKLLSH YSFYTMVNEN SDNPSWKAIG YSVPEPDVDR PPEEAPSAWP 180 LDAGIVETRS LNDATLLRSL TERGLAVKAD VSGAHHTVQC DVVIVGSGCG GGVAAAVLAA 240 AGHKVIVVEK GDYFTAESYT SVEGPSMERL YEKGGIFCTS NVTTIMFTGA TVGGGSAINW 300 SASIRTPEWV TKEWARDHGL PVFGTPEYAR AMDAVCARLA VTGGCRQEGF QNKALRRGCE 360 ALGLRGDAVP RNSSEGHFCG SCHLGCPTGE KRGTDTTWLV DAVDRGAVIL TGCKAERFIL 420 ESNPGGGGDN GRSKKCVGLV AACMSDGISK KLRIEAKVSI SACGALMTPP LLRNSGLKNR 480 HIGRNLHLHP VSMAWGYFPD GTPENAELSG KCYEGGIITT MHRVTARTII QTPALGPGCW 540 ASLIPWESGR DMKERMLRYA RTAHAFALVR DRGAGHVDGE GRVRYAPSRE DVEELRNGLR 600 QALRILVAAG AAEVGTHRSD GLRLRCDGGL RDEDLEAFLK EVTVGEGPML PGPDKWALHC 660 SAHQMGSCRM GCSPKDGAVD GRGESWEAEG LYVCDGSVLP TAVGVNPMIT IQSTAYCVSK 720 GIAESLARDK KQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 0.009 | 632 | 706 | 75 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 8.0e-5 | 626 | 711 | 90 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 8.0e-23 | 582 | 716 | 135 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 1.0e-24 | 289 | 711 | 476 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam00732 | GMC_oxred_N | 5.0e-89 | 267 | 491 | 228 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR36691.1 | 0 | 1 | 730 | 57 | 779 | unknown [Zea mays] |
| DDBJ | BAH94933.1 | 0 | 1 | 727 | 33 | 759 | Os10g0474966 [Oryza sativa Japonica Group] |
| RefSeq | NP_001142399.1 | 0 | 55 | 730 | 1 | 671 | hypothetical protein LOC100274574 [Zea mays] |
| RefSeq | XP_002464495.1 | 0 | 1 | 732 | 38 | 772 | hypothetical protein SORBIDRAFT_01g019470 [Sorghum bicolor] |
| RefSeq | XP_002464496.1 | 0 | 1 | 732 | 1 | 732 | hypothetical protein SORBIDRAFT_01g019480 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ljp_B | 0.0002 | 408 | 711 | 225 | 515 | A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant |
| PDB | 3ljp_A | 0.0002 | 408 | 711 | 225 | 515 | A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant |
| PDB | 3t37_A | 0.0002 | 207 | 489 | 5 | 308 | A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti |
| PDB | 3nne_H | 0.0003 | 408 | 711 | 225 | 515 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
| PDB | 3nne_G | 0.0003 | 408 | 711 | 225 | 515 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| HO794753 | 736 | 1 | 726 | 0 |
| CT860754 | 306 | 409 | 714 | 0 |
| HO779224 | 464 | 189 | 647 | 0 |
| CK208913 | 350 | 284 | 633 | 0 |
| DV520496 | 292 | 277 | 568 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
