| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si034359m |
| Family | AA3 |
| Protein Properties | Length: 763 Molecular Weight: 82415.1 Isoelectric Point: 7.8012 |
| Chromosome | Chromosome/Scaffold: 9 Start: 16740318 End: 16746340 |
| Description | Long-chain fatty alcohol dehydrogenase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| AA3 | 243 | 758 | 9.80909e-45 |
| TYHTVQCDVVIVGSGCGGGVAAAALASAGHKVVVVEKGEYFTAEDYSSVEGPSMERLYEKGGIFCTSNVTTVLFTGSMVGGGSAVNWSASIRTPEEVRQE WAREHGLPVFASPGYVEAMDAVCARLAVTDGCREEGFQNKAVRRGCEALGLRADAVPRNSSEGHFCGSCHLGCPTGDKRGTDTTWLVDSVARGAVILTGC KAECFILESNSGENARRSRKCVGLVATCMVAGVTKKLRIEAKVSIAACGALMTPPLLRNSGLKNRHIGRNLHLHPVSMAWGYFPENKQQEPQPPPLTGKC YEGGIITTMHRVTERTIVETPALGPGCFASMVPWESGRDMKDRMRRYARTAHAFALVRDRGAGTVDGEGRVCYSPARDDVDELRNGLRRALRILVAAGAA EVGTHRSDGHRLRCDGGVRDDELDAFLDEVTVATGPMLPGSDKWALLCSAHQMGSCRMGSSPRDGAVDGRGESWEAEGLYVCDGSLLPTAVGVNPMITIQ STAYCLSEGIAESLAQ | |||
| Full Sequence |
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| Protein Sequence Length: 763 Download |
| MAAQAEAKAA TRRWSRGHPL LGGCKRERYT HGLRPPQMEA LRAMCGALIP SLPVVEGHHG 60 GDADHGRGSK DVVERFYLAS AADGTIPDEV AELVTRCVWE AVVLVNVVLW ILSTRVGTLA 120 LCGRLCMSGK FPYVRKFADM PVERREEALG RWNKARWLFP LKITFVVIKV LSHYAFYTMV 180 NENSDNPCWK AIGYSVPDME EPREAPSPRS LDNGVVETKA LNDTTLLRSL VDKGLVVRTD 240 ASTYHTVQCD VVIVGSGCGG GVAAAALASA GHKVVVVEKG EYFTAEDYSS VEGPSMERLY 300 EKGGIFCTSN VTTVLFTGSM VGGGSAVNWS ASIRTPEEVR QEWAREHGLP VFASPGYVEA 360 MDAVCARLAV TDGCREEGFQ NKAVRRGCEA LGLRADAVPR NSSEGHFCGS CHLGCPTGDK 420 RGTDTTWLVD SVARGAVILT GCKAECFILE SNSGENARRS RKCVGLVATC MVAGVTKKLR 480 IEAKVSIAAC GALMTPPLLR NSGLKNRHIG RNLHLHPVSM AWGYFPENKQ QEPQPPPLTG 540 KCYEGGIITT MHRVTERTIV ETPALGPGCF ASMVPWESGR DMKDRMRRYA RTAHAFALVR 600 DRGAGTVDGE GRVCYSPARD DVDELRNGLR RALRILVAAG AAEVGTHRSD GHRLRCDGGV 660 RDDELDAFLD EVTVATGPML PGSDKWALLC SAHQMGSCRM GSSPRDGAVD GRGESWEAEG 720 LYVCDGSLLP TAVGVNPMIT IQSTAYCLSE GIAESLAQRK RR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 0.007 | 662 | 736 | 75 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 0.0002 | 656 | 757 | 106 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 1.0e-19 | 615 | 748 | 134 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 5.0e-20 | 318 | 762 | 501 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam00732 | GMC_oxred_N | 4.0e-85 | 296 | 518 | 226 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR36691.1 | 0 | 6 | 758 | 24 | 777 | unknown [Zea mays] |
| DDBJ | BAH94933.1 | 0 | 16 | 758 | 10 | 760 | Os10g0474966 [Oryza sativa Japonica Group] |
| RefSeq | NP_001142399.1 | 0 | 93 | 758 | 1 | 669 | hypothetical protein LOC100274574 [Zea mays] |
| RefSeq | XP_002464495.1 | 0 | 1 | 762 | 1 | 772 | hypothetical protein SORBIDRAFT_01g019470 [Sorghum bicolor] |
| RefSeq | XP_002464496.1 | 0 | 38 | 762 | 1 | 732 | hypothetical protein SORBIDRAFT_01g019480 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3t37_A | 0.00000002 | 239 | 731 | 8 | 499 | A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti |
| PDB | 2gew_A | 0.001 | 693 | 745 | 442 | 489 | A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti |
| PDB | 1n4w_A | 0.001 | 693 | 745 | 442 | 489 | A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti |
| PDB | 1n4v_A | 0.001 | 693 | 745 | 442 | 489 | A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti |
| PDB | 1n4u_A | 0.001 | 693 | 745 | 442 | 489 | A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO794753 | 752 | 18 | 756 | 0 |
| DV520496 | 295 | 306 | 598 | 0 |
| CT860754 | 307 | 438 | 744 | 0 |
| CK208913 | 325 | 313 | 637 | 0 |
| EG400359 | 285 | 464 | 748 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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