| APIS family ID | APIS007 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN006 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:20007596 | |||||||||||||
| PDB structures | 2KMG; | |||||||||||||
| Pfam domains | PF03230.16 | |||||||||||||
| Phrog | phrog_10132 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Alcaligenaceae;g__Bordetella;s__Bordetella pertussis | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ArdB and KlcA act as anti-restriction proteins and inhibit the four main families of Type I RM systems in vivo. | |||||||||||||
| MNTEEQPVTA SLVAEAQRLD FLPTYFGPRL MMRGEALVYA WMRRLCERYN GAYWHYYALS | 60 |
| DGGFYMAPDL AGRLEIEVNG NGFRGELSAD AAGIVATLFA LGQLAAEIAD TDAADALIDR | 120 |
| YHFLRGFAAG HPEAAAIYRA ID | 142 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GW18-F1-model_v4 | 5 | 142 | 6 | 141 | 0.8836 | 0.8453 |
| AF-A0A0H3GVF3-F1-model_v4 | 4 | 142 | 1 | 132 | 0.8863 | 0.8323 |
| AF-Q93GQ0-F1-model_v4 | 1 | 142 | 2 | 144 | 0.8607 | 0.8259 |
| AF-P52139-F1-model_v4 | 3 | 142 | 14 | 152 | 0.8616 | 0.8126 |
| AF-P75676-F1-model_v4 | 4 | 142 | 15 | 152 | 0.8595 | 0.8115 |
| AF-Q327Q6-F1-model_v4 | 5 | 142 | 19 | 157 | 0.8572 | 0.7984 |
| AF-A0A077ZNG7-F1-model_v4 | 11 | 142 | 9 | 141 | 0.8566 | 0.7916 |
| AF-Q32HM6-F1-model_v4 | 5 | 142 | 43 | 181 | 0.8614 | 0.756 |
| AF-A0A0H3GZ47-F1-model_v4 | 5 | 142 | 87 | 221 | 0.8339 | 0.6693 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001487061361.pdb | 6 | 142 | 1 | 132 | 0.9307 | 0.8787 |
| MGYP001183799919.pdb | 3 | 142 | 4 | 140 | 0.8988 | 0.87 |
| MGYP000412510903.pdb | 6 | 142 | 1 | 131 | 0.9216 | 0.8649 |
| MGYP002712737661.pdb | 3 | 142 | 1 | 135 | 0.9102 | 0.8645 |
| MGYP003492148347.pdb | 5 | 142 | 1 | 134 | 0.9103 | 0.8628 |
| MGYP000877157904.pdb | 6 | 142 | 1 | 135 | 0.9095 | 0.8627 |
| MGYP001225601631.pdb | 4 | 142 | 2 | 137 | 0.8995 | 0.8609 |
| MGYP000087302693.pdb | 6 | 142 | 1 | 132 | 0.9159 | 0.8606 |
| MGYP001201501853.pdb | 4 | 142 | 1 | 134 | 0.9094 | 0.8602 |
| MGYP001335377403.pdb | 6 | 142 | 1 | 131 | 0.9178 | 0.8601 |
| Fam ID | Seed protein | Member count | Model | Alignment |
|---|---|---|---|---|
| APIS007 | BAF33451.1 | 63 | HMM model | Member alignment |
