APIS family ID | APIS069 | |||||||||||||
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Inhibited defense system | ||||||||||||||
CLAN ID | CLAN003 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | ||||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | PF03230.16 | |||||||||||||
Phrog | phrog_10132 | |||||||||||||
Host taxa | ||||||||||||||
Gene Location | Start: 343; End: 774; Strand: + | |||||||||||||
Description | ||||||||||||||
Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS007,ArdB which has seed protein. |
Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
---|---|---|---|---|---|---|---|---|---|---|---|
IMGVR_UViG_3300036792_000137 | 1288 | 1587 | - | IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_1288_1587 | 99 | 10715.93 | -5.0 | 4.5468 | hypothetical protein | ||
IMGVR_UViG_3300036792_000137 | 1598 | 1840 | - | IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_1598_1840 | 80 | 8401.68 | 4.5 | 10.7162 | hypothetical protein | ||
IMGVR_UViG_3300036792_000137 | 1837 | 2442 | - | IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_1837_2442 | 201 | 22012.79 | 10.5 | 10.2799 | hypothetical protein | phrog_17923 | |
IMGVR_UViG_3300036792_000137 | 2439 | 2636 | - | IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_2439_2636 | 65 | 7101.94 | -1.0 | 5.5707 | hypothetical protein | ||
IMGVR_UViG_3300036792_000137 | 343 | 774 | + | IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_343_774 | 143 | 15871.73 | -1.5 | 6.1247 | hypothetical protein | phrog_10132 | PF03230.16 |
IMGVR_UViG_3300036792_000137 | 42 | 218 | + | IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_42_218 | 58 | 6319.69 | 4.0 | 10.1264 | hypothetical protein | phrog_1039 ; phrog_1584 | PF14373.9 |
IMGVR_UViG_3300036792_000137 | 796 | 1029 | + | IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_796_1029 | 77 | 8472.94 | -0.5 | 5.7905 | antitoxin HicB |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
AF-Q93GQ0-F1-model_v4 | 1 | 143 | 5 | 144 | 0.9302 | 0.9149 |
AF-A0A077ZNG7-F1-model_v4 | 1 | 143 | 5 | 141 | 0.9165 | 0.8953 |
AF-A0A0H3GW18-F1-model_v4 | 4 | 143 | 8 | 141 | 0.8769 | 0.8531 |
AF-A0A0H3GVF3-F1-model_v4 | 4 | 143 | 3 | 132 | 0.8722 | 0.8195 |
AF-P52139-F1-model_v4 | 4 | 143 | 18 | 152 | 0.8586 | 0.818 |
AF-P75676-F1-model_v4 | 4 | 143 | 18 | 152 | 0.8567 | 0.8156 |
AF-Q327Q6-F1-model_v4 | 4 | 143 | 21 | 157 | 0.8514 | 0.7979 |
AF-A0A0H3GZ47-F1-model_v4 | 1 | 143 | 84 | 221 | 0.9197 | 0.7523 |
AF-Q32HM6-F1-model_v4 | 4 | 143 | 45 | 181 | 0.8529 | 0.7521 |
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
MGYP000816921373.pdb | 1 | 143 | 1 | 139 | 0.9505 | 0.9242 |
MGYP000611349549.pdb | 4 | 143 | 8 | 145 | 0.9519 | 0.9177 |
MGYP000112106482.pdb | 4 | 143 | 4 | 140 | 0.9387 | 0.917 |
MGYP001142107270.pdb | 4 | 143 | 5 | 141 | 0.9397 | 0.9161 |
MGYP003561631401.pdb | 3 | 143 | 5 | 142 | 0.9326 | 0.9098 |
MGYP002759879196.pdb | 4 | 143 | 5 | 141 | 0.9348 | 0.9097 |
MGYP001611400893.pdb | 6 | 143 | 1 | 138 | 0.9368 | 0.9088 |
MGYP000926023203.pdb | 5 | 143 | 1 | 136 | 0.9411 | 0.9047 |
MGYP000465578469.pdb | 3 | 143 | 6 | 143 | 0.9307 | 0.9043 |
MGYP001044518354.pdb | 5 | 143 | 7 | 143 | 0.9261 | 0.9035 |
Fam ID | Seed protein | Member count | Model | Alignment | APIS069 | IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_343_774 | 5 | HMM model | Member alignment |
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Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
---|---|---|---|---|---|---|---|
APIS007 | 1.77E-47 | 2 | 143 | 18 | 151 | restriction-modification (RM) | BAF33451.1 |
APIS038 | 2.29E-40 | 3 | 143 | 11 | 150 | IMGVR_UViG_2576861805_000002|2576861805|2579667884 | |
APIS039 | 1.79E-25 | 3 | 143 | 44 | 179 | IMGVR_UViG_2751185776_000007|2751185776|2753238834 | |
APIS037 | 3.95E-25 | 7 | 143 | 8 | 141 | IMGVR_UViG_2541047688_000003|2541047688|2543982737 | |
APIS055 | 2.07E-23 | 3 | 143 | 7 | 142 | OL763419_00042 |
Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
---|---|---|---|---|---|---|---|---|---|
IMGVR_UViG_2852743531_000002|2852743531|2852746060 | 40.299 | 1.06e-22 | 95.5 | 91% | Paraburkholderia tuberum | IMGVR | PF03230 | phrog_10132 | |
IMGVR_UViG_2921707344_000004|2921707344|2921709599 | 40.146 | 1.51e-21 | 92.8 | 93% | Paraburkholderia tuberum | IMGVR | PF03230 | phrog_10132 | |
IMGVR_UViG_2921707344_000005|2921707344|2921712269 | 41.606 | 3.63e-24 | 99.4 | 93% | Paraburkholderia tuberum | IMGVR | PF03230 | phrog_10132 | |
IMGVR_UViG_3300033475_000967|3300033475|Ga0310811_1000048848 | 64.789 | 2.53e-59 | 188 | 99% | IMGVR | PF03230 | phrog_10132 | ||
IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_343_774 | 100.000 | 6.76e-101 | 293 | 100% | IMGVR | PF03230 | phrog_10132 |