APIS family ID | APIS039 | |||||||||||||
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Inhibited defense system | ||||||||||||||
CLAN ID | CLAN003 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | ||||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | PF03230.16 | |||||||||||||
Phrog | phrog_10132 | |||||||||||||
Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Morganella;s__Morganella psychrotolerans_B | |||||||||||||
Gene Location | Start: 10487; End: 10912; Strand: - | |||||||||||||
Description | ||||||||||||||
Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS007,ArdB which has seed protein. |
Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
---|---|---|---|---|---|---|---|---|---|---|---|
IMGVR_UViG_2751185776_000007 | 6914 | 7336 | - | IMGVR_UViG_2751185776_000007|2751185776|2753238829 | 140 | 15209.04 | -9.5 | 4.2611 | hypothetical protein | ||
IMGVR_UViG_2751185776_000007 | 7431 | 7916 | - | IMGVR_UViG_2751185776_000007|2751185776|2753238830 | 161 | 17967.29 | 13.5 | 10.1417 | hypothetical protein | ||
IMGVR_UViG_2751185776_000007 | 8073 | 8540 | - | IMGVR_UViG_2751185776_000007|2751185776|2753238831 | 155 | 17383.10 | 6.0 | 9.6596 | hypothetical protein | ||
IMGVR_UViG_2751185776_000007 | 8718 | 9425 | - | IMGVR_UViG_2751185776_000007|2751185776|2753238832 | 235 | 27363.89 | 15.5 | 10.0618 | predicted DNA-binding transcriptional regulator YafY | phrog_13105 | PF13280.9 |
IMGVR_UViG_2751185776_000007 | 9637 | 10473 | - | IMGVR_UViG_2751185776_000007|2751185776|2753238833 | 278 | 31760.34 | 12.0 | 9.9993 | uncharacterized protein DUF932 | phrog_12094 | PF06067.14 |
IMGVR_UViG_2751185776_000007 | 10487 | 10912 | - | IMGVR_UViG_2751185776_000007|2751185776|2753238834 | 141 | 16050.82 | -12.5 | 3.9947 | antirestriction protein | phrog_10132 | PF03230.16 |
IMGVR_UViG_2751185776_000007 | 11004 | 11876 | - | IMGVR_UViG_2751185776_000007|2751185776|2753238835 | 290 | 32663.10 | -2.5 | 5.8864 | hypothetical protein | phrog_11431 ; phrog_16468 | PF01926.26 |
IMGVR_UViG_2751185776_000007 | 11938 | 12870 | - | IMGVR_UViG_2751185776_000007|2751185776|2753238836 | 310 | 36472.83 | 8.5 | 9.2282 | hypothetical protein | ||
IMGVR_UViG_2751185776_000007 | 13307 | 13885 | + | IMGVR_UViG_2751185776_000007|2751185776|2753238837 | 192 | 22808.02 | 15.5 | 9.9478 | uncharacterized protein DUF3296 | phrog_25019 | PF11726.11 |
IMGVR_UViG_2751185776_000007 | 13991 | 14200 | + | IMGVR_UViG_2751185776_000007|2751185776|2753238838 | 69 | 8143.46 | 2.0 | 9.8652 | AlpA family transcriptional regulator | phrog_9834 ; phrog_66 ; phrog_2790 | PF05930.15 |
IMGVR_UViG_2751185776_000007 | 14562 | 15002 | - | IMGVR_UViG_2751185776_000007|2751185776|2753238839 | 146 | 16592.06 | -6.5 | 4.3904 | arsenate reductase | phrog_16693 | PF03960.18 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
AF-P75676-F1-model_v4 | 1 | 141 | 10 | 152 | 0.9559 | 0.9109 |
AF-P52139-F1-model_v4 | 1 | 141 | 9 | 152 | 0.9532 | 0.909 |
AF-A0A0H3GW18-F1-model_v4 | 1 | 141 | 1 | 141 | 0.9167 | 0.8995 |
AF-Q327Q6-F1-model_v4 | 2 | 141 | 15 | 157 | 0.9473 | 0.8897 |
AF-Q32HM6-F1-model_v4 | 1 | 141 | 38 | 181 | 0.951 | 0.8384 |
AF-Q93GQ0-F1-model_v4 | 7 | 141 | 7 | 144 | 0.8636 | 0.838 |
AF-A0A0H3GVF3-F1-model_v4 | 6 | 141 | 1 | 132 | 0.882 | 0.8309 |
AF-A0A077ZNG7-F1-model_v4 | 12 | 141 | 9 | 141 | 0.8676 | 0.829 |
AF-A0A0H3GZ47-F1-model_v4 | 2 | 141 | 35 | 221 | 0.8463 | 0.686 |
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
MGYP000479619222.pdb | 3 | 141 | 1 | 141 | 0.9517 | 0.9427 |
MGYP000901984350.pdb | 2 | 141 | 1 | 138 | 0.9621 | 0.9411 |
MGYP000931080388.pdb | 1 | 141 | 6 | 146 | 0.9653 | 0.9383 |
MGYP003365227403.pdb | 1 | 141 | 3 | 143 | 0.951 | 0.9311 |
MGYP001992189960.pdb | 5 | 141 | 1 | 134 | 0.9624 | 0.9271 |
MGYP001201501853.pdb | 5 | 141 | 1 | 134 | 0.9598 | 0.9243 |
MGYP001037997637.pdb | 3 | 141 | 1 | 135 | 0.9571 | 0.9242 |
MGYP000589756821.pdb | 1 | 141 | 6 | 149 | 0.9606 | 0.9238 |
MGYP001120502683.pdb | 6 | 141 | 1 | 133 | 0.9599 | 0.9212 |
MGYP001805956192.pdb | 1 | 141 | 6 | 147 | 0.9529 | 0.9208 |
Fam ID | Seed protein | Member count | Model | Alignment | APIS039 | IMGVR_UViG_2751185776_000007|2751185776|2753238834 | 49 | HMM model | Member alignment |
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Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
---|---|---|---|---|---|---|---|
APIS007 | 9.89E-74 | 2 | 141 | 14 | 151 | restriction-modification (RM) | BAF33451.1 |
APIS069 | 1.27E-25 | 6 | 141 | 6 | 144 | IMGVR_UViG_3300036792_000137|3300036792|Ga0376663_0000427_343_774 | |
APIS038 | 1.91E-25 | 4 | 141 | 8 | 150 | IMGVR_UViG_2576861805_000002|2576861805|2579667884 | |
APIS055 | 4.85E-21 | 2 | 141 | 2 | 142 | OL763419_00042 | |
APIS037 | 1.52E-16 | 10 | 141 | 7 | 141 | IMGVR_UViG_2541047688_000003|2541047688|2543982737 |