| APIS family ID | APIS050 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN028 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_3972 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending broad-spectrum counter-defense because it belongs to the same clan as family APIS035 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000932118009.pdb | 2 | 109 | 1 | 96 | 0.7406 | 0.6652 |
| MGYP003611076310.pdb | 2 | 108 | 1 | 94 | 0.6536 | 0.583 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS050 | IMGVR_UViG_3300010885_038456|3300010885|Ga0133913_1000088583 | 11 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS035 | 2.50E-52 | 1 | 116 | 17 | 121 | broad-spectrum counter-defense | YP_009790938.1 |
| APIS075 | 1.63E-50 | 1 | 116 | 25 | 129 | KY083726_00051 | |
| APIS047 | 8.41E-49 | 1 | 116 | 20 | 123 | IMGVR_UViG_3300009183_005911|3300009183|Ga0114974_10000105111 | |
| APIS074 | 8.58E-48 | 2 | 116 | 5 | 105 | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_88760_89182 | |
| APIS082 | 3.96E-21 | 1 | 110 | 1 | 98 | MGV-GENOME-0365202_107 |