| APIS family ID | APIS074 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN032 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_3972 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: 88760; End: 89182; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending broad-spectrum counter-defense because it belongs to the same clan as family APIS035 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300042691_005779 | 86250 | 86603 | - | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_86250_86603 | 117 | 13279.53 | 7.0 | 10.0306 | nucleoid DNA-binding protein | ||
| IMGVR_UViG_3300042691_005779 | 86596 | 86955 | - | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_86596_86955 | 119 | 13470.79 | 7.5 | 10.1728 | hypothetical protein | ||
| IMGVR_UViG_3300042691_005779 | 87036 | 87284 | - | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_87036_87284 | 82 | 9459.12 | -6.0 | 3.9206 | hypothetical protein | ||
| IMGVR_UViG_3300042691_005779 | 87804 | 88238 | + | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_87804_88238 | 144 | 15943.20 | 1.5 | 7.2454 | hypothetical protein | ||
| IMGVR_UViG_3300042691_005779 | 88319 | 88471 | - | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_88319_88471 | 50 | 6036.27 | 5.0 | 9.9134 | hypothetical protein | ||
| IMGVR_UViG_3300042691_005779 | 88760 | 89182 | + | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_88760_89182 | 140 | 16545.03 | -21.0 | 3.8160 | hypothetical protein | phrog_3972 ; phrog_16544 | |
| IMGVR_UViG_3300042691_005779 | 89270 | 89533 | + | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_89270_89533 | 87 | 10106.63 | -2.5 | 5.0497 | hypothetical protein | ||
| IMGVR_UViG_3300042691_005779 | 89692 | 90027 | + | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_89692_90027 | 111 | 12826.72 | -1.0 | 5.6757 | hypothetical protein | ||
| IMGVR_UViG_3300042691_005779 | 90002 | 90409 | + | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_90002_90409 | 135 | 15345.47 | -7.5 | 4.2881 | hypothetical protein | phrog_24162 | PF20475.1 |
| IMGVR_UViG_3300042691_005779 | 90503 | 91042 | + | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_90503_91042 | 179 | 20929.08 | -27.5 | 3.8315 | hypothetical protein | ||
| IMGVR_UViG_3300042691_005779 | 91020 | 91205 | + | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_91020_91205 | 61 | 7157.32 | 4.0 | 10.1006 | hypothetical protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000932118009.pdb | 2 | 96 | 1 | 95 | 0.7991 | 0.6114 |
| MGYP003611076310.pdb | 2 | 96 | 1 | 94 | 0.6747 | 0.5522 |
| MGYP001499261589.pdb | 1 | 96 | 1 | 97 | 0.6409 | 0.5343 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS074 | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_88760_89182 | 4 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS075 | 3.41E-51 | 1 | 108 | 25 | 133 | KY083726_00051 | |
| APIS047 | 9.95E-50 | 1 | 115 | 20 | 134 | IMGVR_UViG_3300009183_005911|3300009183|Ga0114974_10000105111 | |
| APIS035 | 4.67E-49 | 1 | 108 | 17 | 125 | broad-spectrum counter-defense | YP_009790938.1 |
| APIS050 | 1.81E-46 | 1 | 107 | 1 | 115 | IMGVR_UViG_3300010885_038456|3300010885|Ga0133913_1000088583 | |
| APIS082 | 1.87E-16 | 1 | 98 | 1 | 98 | MGV-GENOME-0365202_107 |
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300008110_000563|3300008110|Ga0114343_10008418 | 78.472 | 2.25e-75 | 229 | 100% | IMGVR | phrog_3972 | |||
| IMGVR_UViG_3300021079_000008|3300021079|Ga0194055_100001421 | 47.525 | 6.37e-29 | 94.0 | 71% | IMGVR | phrog_3972 phrog_16544 | |||
| IMGVR_UViG_3300032236_001858|3300032236|Ga0335263_1052110487 | 46.535 | 2.31e-20 | 88.6 | 83% | IMGVR | phrog_3972 | |||
| IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_88760_89182 | 100.000 | 2.37e-100 | 291 | 100% | IMGVR | phrog_3972 |