| APIS family ID | APIS082 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN028 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_3972 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending broad-spectrum counter-defense because it belongs to the same clan as family APIS035 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001499261589.pdb | 1 | 97 | 1 | 98 | 0.6936 | 0.6329 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS082 | MGV-GENOME-0365202_107 | 8 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS035 | 1.17E-22 | 1 | 105 | 17 | 122 | broad-spectrum counter-defense | YP_009790938.1 |
| APIS075 | 1.46E-22 | 1 | 105 | 25 | 130 | KY083726_00051 | |
| APIS047 | 1.65E-21 | 1 | 108 | 20 | 127 | IMGVR_UViG_3300009183_005911|3300009183|Ga0114974_10000105111 | |
| APIS050 | 2.06E-20 | 1 | 106 | 1 | 114 | IMGVR_UViG_3300010885_038456|3300010885|Ga0133913_1000088583 | |
| APIS074 | 7.69E-15 | 2 | 103 | 5 | 104 | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_88760_89182 |
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300045988_163393|3300045988|Ga0495776_011466_95099_95431 | 93.636 | 3.94e-69 | 211 | 100% | IMGVR | phrog_3972 | |||
| MGV-GENOME-0363025_71 | 95.455 | 2.19e-70 | 214 | 99% | MGV | phrog_3972 | |||
| MGV-GENOME-0365202_107 | 100.000 | 6.68e-79 | 236 | 100% | MGV | phrog_3972 | |||
| MGV-GENOME-0365464_59 | 94.545 | 6.94e-70 | 213 | 99% | MGV | phrog_3972 | |||
| MGV-GENOME-0366433_104 | 93.636 | 4.11e-69 | 211 | 99% | MGV | phrog_3972 | |||
| uvig_191151_105 | 94.545 | 7.08e-70 | 213 | 94% | GPD | phrog_3972 | |||
| uvig_513645_71 | 95.455 | 2.24e-70 | 214 | 94% | GPD | phrog_3972 | |||
| uvig_87164_84 | 100.000 | 8.88e-79 | 235 | 99% | GPD | phrog_3972 |