APIS family ID | APIS075 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Inhibited defense system | ||||||||||||||
CLAN ID | CLAN028 | |||||||||||||
Seed protein property |
|
|||||||||||||
Phage property |
|
|||||||||||||
PMID/References | ||||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | ||||||||||||||
Phrog | phrog_3972 | |||||||||||||
Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pectobacterium; | |||||||||||||
Gene Location | Start: 46194; End: 46568; Strand: - | |||||||||||||
Description | ||||||||||||||
Note | This family does not have seed protein, but we infer its function is defending broad-spectrum counter-defense because it belongs to the same clan as family APIS035 which has seed protein. |
Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
---|---|---|---|---|---|---|---|---|---|---|---|
KY083726 | 44598 | 44984 | - | KY083726_00046 | 128 | 13570.71 | 13570.71 | 9.6887 | lipoprotein | phrog_13472 ; phrog_26640 | |
KY083726 | 45050 | 45301 | - | KY083726_00047 | 83 | 8877.14 | 8877.14 | 6.8924 | hypothetical protein | ||
KY083726 | 45298 | 45660 | - | KY083726_00048 | 120 | 13701.81 | 13701.81 | 9.9893 | endonuclease | phrog_10495 ; phrog_826 ; phrog_6254 ; phrog_3593 ; phrog_1872 ; phrog_99 ; phrog_59 | PF13392.9 |
KY083726 | 45657 | 45905 | - | KY083726_00049 | 82 | 9604.82 | 9604.82 | 6.0727 | hypothetical protein | phrog_24795 | |
KY083726 | 46018 | 46242 | + | KY083726_00050 | 74 | 7905.86 | 7905.86 | 5.4312 | hypothetical protein | ||
KY083726 | 46194 | 46568 | - | KY083726_00051 | 124 | 14542.86 | 14542.86 | 4.2934 | hypothetical protein | phrog_3972 ; phrog_16544 | |
KY083726 | 46568 | 46861 | - | KY083726_00052 | 97 | 10984.57 | 10984.57 | 4.7771 | hypothetical protein | phrog_18415 | |
KY083726 | 46809 | 47396 | - | KY083726_00053 | 195 | 22084.97 | 22084.97 | 5.8722 | hypothetical protein | phrog_30952 ; phrog_26890 | |
KY083726 | 47383 | 47592 | - | KY083726_00054 | 69 | 7993.24 | 7993.24 | 10.2883 | hypothetical protein | phrog_22755 | |
KY083726 | 47838 | 48080 | - | KY083726_00055 | 80 | 9097.57 | 9097.57 | 8.5693 | hypothetical protein | phrog_24879 | |
KY083726 | 48083 | 48325 | - | KY083726_00056 | 80 | 8876.36 | 8876.36 | 7.3178 | hypothetical protein | phrog_24414 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
MGYP000932118009.pdb | 4 | 102 | 1 | 96 | 0.7576 | 0.6371 |
MGYP003611076310.pdb | 2 | 101 | 1 | 94 | 0.6402 | 0.5545 |
Fam ID | Seed protein | Member count | Model | Alignment | APIS075 | KY083726_00051 | 103 | HMM model | Member alignment |
---|
Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
---|---|---|---|---|---|---|---|
APIS047 | 6.07E-58 | 1 | 107 | 20 | 127 | IMGVR_UViG_3300009183_005911|3300009183|Ga0114974_10000105111 | |
APIS035 | 8.81E-57 | 1 | 109 | 17 | 127 | broad-spectrum counter-defense | YP_009790938.1 |
APIS074 | 5.86E-53 | 2 | 104 | 5 | 106 | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_88760_89182 | |
APIS050 | 2.01E-51 | 1 | 107 | 1 | 116 | IMGVR_UViG_3300010885_038456|3300010885|Ga0133913_1000088583 | |
APIS082 | 7.03E-23 | 1 | 97 | 1 | 98 | MGV-GENOME-0365202_107 |