| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 60638.m00023 |
| Family | CBM13 |
| Protein Properties | Length: 574 Molecular Weight: 64329.9 Isoelectric Point: 6.7253 |
| Chromosome | Chromosome/Scaffold: 60638 Start: 43937 End: 45661 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM13 | 461 | 570 | 5.9e-23 |
| DLCLQANSGNVWLEECASNRAEQQWALYADGSIRPQQNQDNCLTSDASTQGTIVKILSCSPGSSGQRWMWKNDGTIWNLYYGLVLDVRQSDPSLKQIIIW PFTGNPNQKW | |||
| CBM13 | 323 | 449 | 4e-23 |
| VRIVGRNGLCVDVRDGEFHNGNPIQLWPCKSNTDANQLWTLKRDNTIRSNGKCLTTYGYSPGVYVMIYDCNTAVTDATRWQIWDNGTIINPRSSLVLAAT SGNSGTTLTVKTNIYATSQGWLPTNNT | |||
| Full Sequence |
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| Protein Sequence Length: 574 Download |
| MKLQGNFIVW VYAVATWVWL GSISGWSFTS QDNILLLKQY PTVTFTTAGA TAESYRAFIN 60 AMRRQLLTGD DVRHQIPVLR NRVGFPINQR FVLVQLTNQA ELSITLAVDV TNAYVVGYRA 120 GNNAYFFQPD NPEDAEAITH LFTDAQTRQT FAFGGNYDRL EQLGGLRENI ELGNGPLEDA 180 ISALYYYSTG GTQLPALARS FMVCIQMISE AVRFQYIEGE MRTRIRYNRR TAPDASVIRL 240 ENSWGRLSTA IQESNQGAFA SPIQLQRRNG SRFDVYDVSI LIPIIALMVY RCAPPPSLQL 300 PYLIKQVVPM FNDDVCVDPE PTVRIVGRNG LCVDVRDGEF HNGNPIQLWP CKSNTDANQL 360 WTLKRDNTIR SNGKCLTTYG YSPGVYVMIY DCNTAVTDAT RWQIWDNGTI INPRSSLVLA 420 ATSGNSGTTL TVKTNIYATS QGWLPTNNTQ PFVTSIVGLY DLCLQANSGN VWLEECASNR 480 AEQQWALYAD GSIRPQQNQD NCLTSDASTQ GTIVKILSCS PGSSGQRWMW KNDGTIWNLY 540 YGLVLDVRQS DPSLKQIIIW PFTGNPNQKW LPLL |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00161 | RICIN | 8.0e-8 | 491 | 570 | 81 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 9.0e-27 | 322 | 444 | 126 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00652 | Ricin_B_lectin | 4.0e-28 | 321 | 443 | 126 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 1.0e-28 | 456 | 571 | 120 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00161 | RIP | 3.0e-73 | 44 | 254 | 213 | + Ribosome inactivating protein. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0017148 | negative regulation of translation |
| GO:0030598 | rRNA N-glycosylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB22582.1 | 0 | 38 | 574 | 4 | 541 | proricin A chain [Ricinus communis] |
| EMBL | CAA26230.1 | 0 | 11 | 574 | 1 | 565 | unnamed protein product [Ricinus communis] |
| RefSeq | XP_002532189.1 | 0 | 29 | 574 | 29 | 574 | ricin-agglutinin family protein [Ricinus communis] |
| RefSeq | XP_002533608.1 | 0 | 29 | 574 | 29 | 574 | ricin-agglutinin family protein [Ricinus communis] |
| RefSeq | XP_002534649.1 | 0 | 1 | 574 | 1 | 576 | Ricin precursor [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vlc_B | 0 | 40 | 574 | 23 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2vlc_A | 0 | 40 | 574 | 23 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3rtj_B | 0 | 314 | 574 | 2 | 262 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3rti_B | 0 | 314 | 574 | 2 | 262 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2aai_B | 0 | 314 | 574 | 2 | 262 | B Chain B, Crystallographic Refinement Of Ricin To 2.5 Angstroms |
| Transmembrane Domains | ||||
|---|---|---|---|---|
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| Start | End | |||
| 7 | 29 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EV523936 | 289 | 1 | 287 | 0 |
| EV523856 | 275 | 1 | 273 | 0 |
| EV523842 | 276 | 1 | 275 | 0 |
| EV523792 | 273 | 1 | 271 | 0 |
| EV523326 | 274 | 1 | 272 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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