| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s26_42V6.1 |
| Family | CE8 |
| Protein Properties | Length: 632 Molecular Weight: 68210.2 Isoelectric Point: 8.7257 |
| Chromosome | Chromosome/Scaffold: 26 Start: 371210 End: 373529 |
| Description | pectin methylesterase PCR fragment F |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 326 | 615 | 0 |
| AVVAQDGTGQYQSIQAAVNAAPSGGTRWVIYVKKAVYNEYISIPKDKKNLMMYGDGPGQTVITGSRSVKGSGLSTMYTATFEIRAPGTILRDLTIQNTAG PVGEQAVALRAAGDQQAYANVFLEGYQDTLYAHTLRQFYSQCSIYGTIDFIFGNAAAVFQSCNLFARPGMASSQNIYTASGRTDPSENTGFSFLSCTVGA APGLADSFPTYLGRPWKAYSRTLFIKSSLAACVNPEGWLLWNNDPNSGNSVTYAEYQNSGPGADTARRVSWSKQISIAEASKFTVSSFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 632 Download |
| MGRMEGDGGG ERLWRKARSV VSALGAFKRS HKKVDLSDGD AGRTLTPMMP LSNMTPPRKA 60 SKKGCIALSA CMVFIVLVVV TGTVIGVTVS KQFKSRDEVD NANSVSSICR RTLYPEVCNS 120 TLAGTDTSSP QMYIEATMKA AMVAISKSLQ AVEDLQLSSP KKTGIQYSTL KMCKDVLADS 180 LEQVNSSLSR FVELKHYSSL KSEVGNIQQY MAAALTYQDT CMTGVQDFGV WDGSDQLNGT 240 QATHVAQLLS NGLSLVNSLS RLTDFSKLFP SKSRRLLAQP SPPGSSSDFT HALIEMEDDI 300 SLGPEFPRWL SREGRRLLQE KPTPNAVVAQ DGTGQYQSIQ AAVNAAPSGG TRWVIYVKKA 360 VYNEYISIPK DKKNLMMYGD GPGQTVITGS RSVKGSGLST MYTATFEIRA PGTILRDLTI 420 QNTAGPVGEQ AVALRAAGDQ QAYANVFLEG YQDTLYAHTL RQFYSQCSIY GTIDFIFGNA 480 AAVFQSCNLF ARPGMASSQN IYTASGRTDP SENTGFSFLS CTVGAAPGLA DSFPTYLGRP 540 WKAYSRTLFI KSSLAACVNP EGWLLWNNDP NSGNSVTYAE YQNSGPGADT ARRVSWSKQI 600 SIAEASKFTV SSFIAGQEWL PATSITYSAT L* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 1.0e-114 | 104 | 631 | 546 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 4.0e-119 | 104 | 631 | 537 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 7.0e-122 | 101 | 631 | 566 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 3.0e-126 | 98 | 631 | 545 | + pectinesterase | ||
| pfam01095 | Pectinesterase | 6.0e-144 | 325 | 616 | 299 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABQ42392.1 | 0 | 102 | 631 | 71 | 594 | pectin methylesterase-like protein [Taiwania cryptomerioides] |
| GenBank | ACN40878.1 | 0 | 102 | 631 | 83 | 653 | unknown [Picea sitchensis] |
| GenBank | ACN40984.1 | 0 | 105 | 627 | 81 | 596 | unknown [Picea sitchensis] |
| GenBank | ACQ85264.1 | 0 | 109 | 631 | 59 | 564 | pectin methylesterase [Musa acuminata AAA Group] |
| RefSeq | XP_001757192.1 | 0 | 296 | 631 | 1 | 336 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 325 | 627 | 4 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 324 | 631 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 7e-25 | 323 | 621 | 3 | 339 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 7e-25 | 323 | 621 | 3 | 339 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 7e-25 | 323 | 621 | 3 | 339 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Transmembrane Domains | ||||
|---|---|---|---|---|
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| Start | End | |||
| 64 | 86 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DC918452 | 148 | 485 | 632 | 0 |
| HO778758 | 336 | 306 | 631 | 0 |
| DC917043 | 142 | 491 | 632 | 0 |
| DR100880 | 274 | 352 | 620 | 0 |
| ES850416 | 298 | 306 | 596 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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