| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s33_21V6.1 |
| Family | CE8 |
| Protein Properties | Length: 612 Molecular Weight: 66862.5 Isoelectric Point: 7.1336 |
| Chromosome | Chromosome/Scaffold: 33 Start: 170202 End: 173752 |
| Description | pectin methylesterase PCR fragment F |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 303 | 596 | 0 |
| SVVALDGSGNHKSIQTAIDEAPTNSSKRYVIRIKAGIYVEQVKVPRDKTNVTLLGDGAGMTIITGNRSVAVDQTSTIFTATVTVLGNGFVAKALTIRNTA EPSGEQAVALRVTSHQSAFAYVFIEGYQNALYAHVNWQFYTSCTIVGTVDLVFGSAAAVFQQCTLQAKPPNPDDMITFTASDIASPLVQQFAGLVFEACA IDAASDSVEAGTAYLGRPRHQYARTMYIKSSLGKVVTAEGWTLWNAQISSMLHVDYGEYANFGAGSDAKLRVPWSRILYPEQAKKFGVDEFLQG | |||
| Full Sequence |
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| Protein Sequence Length: 612 Download |
| MPAAILPVDV EGIPQDNSAA AACPSIRDAD QENEPEAKEQ KKSWKIPKIS KKGRRAMAAF 60 VVFVVAAVYV GCFVGFRMSR SNNNSIFVNS NDICNNTLYP SACNDTLFGS DTTNSRVVAS 120 KSVKASLKST NETYLNLTRC RDSWPSSRIG IQYSTLEMCV EMYQETLDAT RRCLHAVDSS 180 EVTQVGDLEQ ALSAALTYHF TCVDGLRERK VSCEVNIDRN TELLSNALSL LQRLNSSNAK 240 GTPLPRRRLL AAPEGLTRAS KLSPDERTRI YEMDDDNHDV FPTWLSKKDR QLLTSTSSVT 300 PDSVVALDGS GNHKSIQTAI DEAPTNSSKR YVIRIKAGIY VEQVKVPRDK TNVTLLGDGA 360 GMTIITGNRS VAVDQTSTIF TATVTVLGNG FVAKALTIRN TAEPSGEQAV ALRVTSHQSA 420 FAYVFIEGYQ NALYAHVNWQ FYTSCTIVGT VDLVFGSAAA VFQQCTLQAK PPNPDDMITF 480 TASDIASPLV QQFAGLVFEA CAIDAASDSV EAGTAYLGRP RHQYARTMYI KSSLGKVVTA 540 EGWTLWNAQI SSMLHVDYGE YANFGAGSDA KLRVPWSRIL YPEQAKKFGV DEFLQGRRWL 600 PNLDIAYTGS I* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 3.0e-81 | 274 | 608 | 341 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02416 | PLN02416 | 1.0e-81 | 94 | 611 | 531 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 5.0e-83 | 79 | 607 | 540 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 2.0e-90 | 79 | 611 | 556 | + pectinesterase | ||
| pfam01095 | Pectinesterase | 3.0e-105 | 306 | 596 | 298 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG17110.1 | 0 | 94 | 608 | 47 | 552 | AF188895_1 putative pectin methylesterase 3 [Linum usitatissimum] |
| GenBank | ACN40984.1 | 0 | 92 | 607 | 83 | 596 | unknown [Picea sitchensis] |
| RefSeq | XP_001757192.1 | 0 | 273 | 611 | 1 | 336 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001758499.1 | 0 | 152 | 607 | 1 | 414 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002265171.1 | 0 | 94 | 608 | 101 | 608 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 296 | 600 | 2 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 299 | 607 | 1 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 6e-18 | 314 | 603 | 19 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 6e-18 | 314 | 603 | 19 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 6e-18 | 314 | 603 | 19 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Transmembrane Domains | ||||
|---|---|---|---|---|
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| Start | End | |||
| 56 | 78 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BY953270 | 178 | 1 | 178 | 0 |
| FC911216 | 305 | 276 | 577 | 0 |
| HO778758 | 481 | 136 | 607 | 0 |
| DY267848 | 301 | 276 | 573 | 0 |
| DY801979 | 299 | 306 | 601 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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