Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 486722 |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 51920.7 Isoelectric Point: 6.5802 |
Chromosome | Chromosome/Scaffold: 5 Start: 20698074 End: 20701300 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 422 | 0 |
SDKGGAKLFVPAGQWLTGSFDLISHLTLWLDKGATILGSTSSENWPVVDPLPSYGRGRELPGRRHRSLIYGQNLTDVVITGENGTIDGQGSVWWDWFRNG ELNYTRPHLVELMNSTGLIISNLTFLNSPFWNIHPVYCRDVVVKNLTILAPLESPNTDGVDPDSSTNVCIEDCYIVTGDDLVSIKSGWDEYGISYARPSS KIKINRLTGQTTSSSGIAIGSEMSGGVSEIYIKDLHLFNSNTGIRIKTSPGRGGYVRNVHILNVKLDNVKKAIRFTGKYGEHPDEKFDPKALPAIEKITF ENVNGDGIGVAGLLEGIAGDEFKNICFLNVTLRVKKNSKKSPWECSNVRG |
Full Sequence |
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Protein Sequence Length: 472 Download |
MKRSFLLLYV LLVQSFYGAW CSVGGSLHCE YSSLASLHRP HSVSITEFGA VGDGVTLNTK 60 AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL WLDKGATILG STSSENWPVV 120 DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGSVWWDWFR NGELNYTRPH 180 LVELMNSTGL IISNLTFLNS PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV 240 CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS 300 EIYIKDLHLF NSNTGIRIKT SPGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKFD 360 PKALPAIEKI TFENVNGDGI GVAGLLEGIA GDEFKNICFL NVTLRVKKNS KKSPWECSNV 420 RGYSQWVSPE ITCDSLKESI FPEHQSDCFG LSENNLDISS GLSRSPWLLS W* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-29 | 3 | 421 | 437 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-30 | 35 | 377 | 351 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 6.0e-34 | 41 | 445 | 425 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 7.0e-38 | 141 | 377 | 247 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-62 | 43 | 362 | 343 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB71871.1 | 0 | 1 | 471 | 1 | 470 | putative protein [Arabidopsis thaliana] |
EMBL | CBI37055.1 | 0 | 16 | 471 | 17 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_567126.1 | 0 | 1 | 471 | 1 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002301554.1 | 0 | 1 | 449 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 23 | 471 | 34 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 8.99634e-43 | 41 | 399 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 8.99634e-43 | 41 | 399 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 8.99634e-43 | 41 | 399 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 8.99634e-43 | 41 | 399 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-24 | 87 | 420 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |