Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10016837 |
Family | GH28 |
Protein Properties | Length: 456 Molecular Weight: 49305.6 Isoelectric Point: 5.3383 |
Chromosome | Chromosome/Scaffold: 153 Start: 127860 End: 130819 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 408 | 0 |
ADKGGAQLYVPAGKWLTGSFNLTSHLTLFLAKNAVILASQNSSHWDLVDALPSYGRGIEVPGRRYRSLINGYKLRDVVITGDEGTIDGQGAVWWDWYNTH SLNYSRPHLVEFIESENIVVSNLTFVNAPAYSIHPVYCSHVLVQNISISTPLESHGTVGIVPDSSNNICIEDSSIETGHDAISLKSGWDEYGISYGRPTT DVHIRDVHLKSFSGSCIAFGSEMSGGISNVQVDQAFLHNSISGIELRTTQGRGGYIKHVIISDIELVNITTAFGAKGDVGTHPDEEFDPRALPTIKGITF MDVVGSNVTFAGNFTGIEQSPFTSICMVNVTLTPE |
Full Sequence |
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Protein Sequence Length: 456 Download |
MKMPVALLLL LALISFSNGE EGTMEWSDGR CDHKPILQPR PHSVSILEFG AVGNGKTLNT 60 IAFQNAIFYL KSFADKGGAQ LYVPAGKWLT GSFNLTSHLT LFLAKNAVIL ASQNSSHWDL 120 VDALPSYGRG IEVPGRRYRS LINGYKLRDV VITGDEGTID GQGAVWWDWY NTHSLNYSRP 180 HLVEFIESEN IVVSNLTFVN APAYSIHPVY CSHVLVQNIS ISTPLESHGT VGIVPDSSNN 240 ICIEDSSIET GHDAISLKSG WDEYGISYGR PTTDVHIRDV HLKSFSGSCI AFGSEMSGGI 300 SNVQVDQAFL HNSISGIELR TTQGRGGYIK HVIISDIELV NITTAFGAKG DVGTHPDEEF 360 DPRALPTIKG ITFMDVVGSN VTFAGNFTGI EQSPFTSICM VNVTLTPEPS WVCLNVDGFS 420 ESVSPKPCPQ LSNPVTGSSS CYTITMDSYA KSASL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-16 | 40 | 343 | 319 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-21 | 42 | 439 | 423 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 8.0e-22 | 142 | 428 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-25 | 41 | 405 | 382 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 1.0e-47 | 20 | 356 | 362 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 17 | 429 | 12 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 17 | 429 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 25 | 433 | 20 | 431 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 25 | 455 | 22 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 25 | 455 | 20 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7e-33 | 42 | 400 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7e-33 | 42 | 400 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7e-33 | 42 | 400 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7e-33 | 42 | 400 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-18 | 78 | 417 | 39 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |