Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10027646 |
Family | GH28 |
Protein Properties | Length: 402 Molecular Weight: 44678.9 Isoelectric Point: 8.433 |
Chromosome | Chromosome/Scaffold: 2 Start: 483326 End: 486662 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 15 | 361 | 0 |
RGGGQLNVPPGRWLTAPFNLTSHITLFLAEDAVILGIQDEKYWTLMPPLPSYGYGREHPGSRYGSLIHGQNLKDVVITGHNGTIDGQGQTWWKKYRQKLL NHTRGPLVQIMFSSNIVITNITLRDSPFWTLHPYDCKNVTIRNVTILAPIFEAPNTDGIDPDSCEDMIIEDCYISVGDDGIAIKSGWDQYGIAYGRPSRN IIIRNIVVRSMVSAGISIGSEMSGGVSNVTVENVLIWNSRRAVRIKTAPGRGAYVRQITYRNLTFDNVRVGIVMKTDYNEHPDGGYDPKAVPVIRDISFT SIHGQGVRVPVRIHGSEEIVIRNVTFQDMSVGLTYKKKHIFQCAFVE |
Full Sequence |
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Protein Sequence Length: 402 Download |
MGERGAVAIS KLGKRGGGQL NVPPGRWLTA PFNLTSHITL FLAEDAVILG IQDEKYWTLM 60 PPLPSYGYGR EHPGSRYGSL IHGQNLKDVV ITGHNGTIDG QGQTWWKKYR QKLLNHTRGP 120 LVQIMFSSNI VITNITLRDS PFWTLHPYDC KNVTIRNVTI LAPIFEAPNT DGIDPDSCED 180 MIIEDCYISV GDDGIAIKSG WDQYGIAYGR PSRNIIIRNI VVRSMVSAGI SIGSEMSGGV 240 SNVTVENVLI WNSRRAVRIK TAPGRGAYVR QITYRNLTFD NVRVGIVMKT DYNEHPDGGY 300 DPKAVPVIRD ISFTSIHGQG VRVPVRIHGS EEIVIRNVTF QDMSVGLTYK KKHIFQCAFV 360 EGRVIGTIFP PPCENLDRYD EQGQLVRRSA SPNSTDIDYD F* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-21 | 86 | 373 | 304 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 2.0e-21 | 82 | 373 | 304 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-26 | 85 | 395 | 333 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-36 | 81 | 352 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-52 | 8 | 303 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 3 | 401 | 95 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 3 | 401 | 95 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 3 | 401 | 97 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 3 | 401 | 97 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 3 | 401 | 96 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 8 | 342 | 50 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 8 | 342 | 50 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 8 | 342 | 50 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 8 | 342 | 50 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-18 | 27 | 340 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 355 | 3 | 357 | 0 |
FN769574 | 320 | 57 | 376 | 0 |
CX102356 | 331 | 38 | 368 | 0 |
FE707848 | 282 | 3 | 284 | 0 |
JK989090 | 297 | 106 | 402 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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