Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 492486 |
Family | GH28 |
Protein Properties | Length: 445 Molecular Weight: 48723.2 Isoelectric Point: 8.5023 |
Chromosome | Chromosome/Scaffold: 7 Start: 7884976 End: 7888160 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 72 | 416 | 0 |
RRGGTLLYIPPGVYLTESFNLTSHMTFYLAKGAVIRAVQDTWNWPLIDPLPSYGRGRELPGGRYMSFIHGDGLRDVVITGQNGTIDGQGEVWWNMWRSRT LKYTRPNLIEFKDSKEIIISNVIFQNSPFWNIHPVYCSNVVIHHVTILAPQDSPNTDGIDPDSSYNVCIEDSYISTGDDLVAIKSGWDEYGIAYGRPSSN ITIRRITGSSPFAGIAIGSETSGGIKNIVAEHITLSNMGVGVNIKTNIGRGGYIKNIKISDVYIDTAKYGIKIAGDTGDHPDENYNPNALPIVKGIHIKN VWGVNVRNAGSIQGLKGSPFTGICLSEINLHGSLNSYKTWKCSDV |
Full Sequence |
---|
Protein Sequence Length: 445 Download |
MWRLSVSIFL FSCLAVSSSS YGDSEATCSG IVPLRYRYDK ISITDYGGVG DGRTVNTKAF 60 RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTFYL AKGAVIRAVQ DTWNWPLIDP 120 LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI 180 EFKDSKEIII SNVIFQNSPF WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI 240 EDSYISTGDD LVAIKSGWDE YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNIV 300 AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYIDTAKY GIKIAGDTGD HPDENYNPNA 360 LPIVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN LHGSLNSYKT WKCSDVIGTS 420 LKVSPWPCSE LRTTGGSYSC SSTF* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-24 | 3 | 317 | 327 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 8.0e-25 | 39 | 344 | 315 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-29 | 41 | 403 | 377 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-35 | 138 | 416 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-53 | 42 | 403 | 397 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 1 | 444 | 1 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 1 | 442 | 1 | 445 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 1 | 444 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 34 | 444 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 11 | 441 | 13 | 443 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.99756e-43 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.99756e-43 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.99756e-43 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.99756e-43 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-18 | 84 | 335 | 51 | 301 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |