Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g083670.1 |
Family | GH28 |
Protein Properties | Length: 239 Molecular Weight: 26513.2 Isoelectric Point: 6.9503 |
Chromosome | Chromosome/Scaffold: 2 Start: 25467272 End: 25469532 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 220 | 5.5e-34 |
ADKGGAKLFVPAGRWFTGSFDLISHLTLLLDKDAVILGSTNPGDWPVVDPPPSYGRGRELPGGWHRSLIYGCNLTDVIITGNNGTIDGQRSIWWIESMNS KNVLISNVTFLNSPFWTMHHVYCSHVTVQNVTILAPFGLPNTDGIDSYS |
Full Sequence |
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Protein Sequence Length: 239 Download |
MEIGNHVGDN PFYDPLLVYS WTVWSNSSCK LINIKEVRPH SVSITEFGAV GDWITLNTKA 60 FQNAIFYLKL YADKGGAKLF VPAGRWFTGS FDLISHLTLL LDKDAVILGS TNPGDWPVVD 120 PPPSYGRGRE LPGGWHRSLI YGCNLTDVII TGNNGTIDGQ RSIWWIESMN SKNVLISNVT 180 FLNSPFWTMH HVYCSHVTVQ NVTILAPFGL PNTDGIDSYS LIMYALKTGY ISVTTQKH* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12708 | Pectate_lyase_3 | 1.0e-8 | 41 | 183 | 145 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
PLN02188 | PLN02188 | 4.0e-9 | 34 | 216 | 206 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-9 | 39 | 216 | 203 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-11 | 40 | 217 | 194 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 5.0e-29 | 42 | 217 | 214 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU18828.1 | 0 | 21 | 232 | 22 | 248 | unknown [Glycine max] |
EMBL | CBI37055.1 | 0 | 21 | 232 | 22 | 248 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 21 | 232 | 73 | 299 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320934.1 | 0 | 21 | 232 | 15 | 241 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 20 | 232 | 31 | 258 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2uvf_B | 0.00000000004 | 37 | 118 | 152 | 228 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 2uvf_A | 0.00000000004 | 37 | 118 | 152 | 228 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 2uve_B | 0.00000000004 | 37 | 118 | 152 | 228 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
PDB | 2uve_A | 0.00000000004 | 37 | 118 | 152 | 228 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
PDB | 3jur_D | 0.000000002 | 40 | 220 | 26 | 245 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE681628 | 227 | 21 | 232 | 0 |
FE681629 | 227 | 21 | 232 | 0 |
GW894867 | 215 | 21 | 220 | 0 |
CV884789 | 227 | 21 | 232 | 0 |
JG595311 | 216 | 20 | 220 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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