Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006062m |
Family | GH28 |
Protein Properties | Length: 460 Molecular Weight: 49709.1 Isoelectric Point: 5.5114 |
Chromosome | Chromosome/Scaffold: 1 Start: 4363531 End: 4366759 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 67 | 420 | 0 |
DKGGAQLYVPAGKWLTGCITLTSHLTLFLEKDAIILGSEDYSRWDLVDPLPSYGRGVEIPGKRYRSLISGQNLTDFTCNFVFVCCTGNNGTIDGQGSVWW EKLSAHSLNYSRPHLVELVWSVNIVISNLTFLNAPASNIHPVYCSKLLVQNITIYSPPESPYTSGIVPDSSEHVCIENSNISMGYDAVVLKSGWDEYGIS YNKSTSHVHIRKVHLQSSSGSAIAFGSEMSGGISTILAENIYIHDSLTGIELKTAKGRGGYLRNILVSQVYMENVQQGINVTGQSTSHPDDKFDPQALPI VSDISFHDIIGLNITTAGIFSGIEESPFTSFCLSNVSFSVTSDPSNSWVCSDVV |
Full Sequence |
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Protein Sequence Length: 460 Download |
MKRLVVLLLL LVWSNAAEFN GVCKSNWPLT PRPHSVSVSE FGAVGDGKTV NTVAFQNAIF 60 YLKSFVDKGG AQLYVPAGKW LTGCITLTSH LTLFLEKDAI ILGSEDYSRW DLVDPLPSYG 120 RGVEIPGKRY RSLISGQNLT DFTCNFVFVC CTGNNGTIDG QGSVWWEKLS AHSLNYSRPH 180 LVELVWSVNI VISNLTFLNA PASNIHPVYC SKLLVQNITI YSPPESPYTS GIVPDSSEHV 240 CIENSNISMG YDAVVLKSGW DEYGISYNKS TSHVHIRKVH LQSSSGSAIA FGSEMSGGIS 300 TILAENIYIH DSLTGIELKT AKGRGGYLRN ILVSQVYMEN VQQGINVTGQ STSHPDDKFD 360 PQALPIVSDI SFHDIIGLNI TTAGIFSGIE ESPFTSFCLS NVSFSVTSDP SNSWVCSDVV 420 GSSVNVSPEP CPELQSSSSS DSSDCSVLSL HANNRVAVL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-16 | 32 | 424 | 411 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-18 | 156 | 419 | 279 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-20 | 34 | 423 | 413 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-20 | 33 | 403 | 388 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 1.0e-44 | 36 | 394 | 389 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 12 | 432 | 15 | 428 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36899.1 | 0 | 14 | 446 | 35 | 465 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002269037.1 | 0 | 14 | 446 | 100 | 530 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 12 | 432 | 17 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 15 | 440 | 18 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-25 | 34 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-25 | 34 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-25 | 34 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-25 | 34 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-16 | 156 | 375 | 117 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |