Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g02720.1 |
Family | GH28 |
Protein Properties | Length: 528 Molecular Weight: 57008.8 Isoelectric Point: 6.603 |
Chromosome | Chromosome/Scaffold: 1 Start: 1828877 End: 1832145 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 125 | 460 | 0 |
ADKGGAQLFVPAGRWLTGSFSLISHLTLSLDKDAVIIGSPDSSNWPVIDPLPSYGRGRELPGERHQSLIFGYNLTDVIITGANGTIDGQGAVWWDWFHNH TLNYTRPHLVELMYSTNVVISNLTFKNSPFWNIHPVYCSQVLVEHLTILAPLDSPNTDGINPDSSTNICIKHCYVRNGDDVIVIKSGWDEYGISFAHPSS NISITNITGETRGGAGIAIGSEMSGGISEVRAERLRIVNSLHGIRIKTAPGRGGYVRNVYIADVSMHNVSMAIRITGNYGEHPDNNYDRNALPMISNITI ENVVGINVGIAGILEGIEGDNFSSICISNVSLSVQS |
Full Sequence |
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Protein Sequence Length: 528 Download |
MFILTVSVLS LGSDVALDHI IWLAVVAALS IPRFRVLTKS GNCVVWARYC AGSSGFIQVF 60 RALLVFTAIV ETQWPGVSGI YCKDMASGVY RPHSVTITEF GAVGDGVALN TKAFQNAIFY 120 LNSFADKGGA QLFVPAGRWL TGSFSLISHL TLSLDKDAVI IGSPDSSNWP VIDPLPSYGR 180 GRELPGERHQ SLIFGYNLTD VIITGANGTI DGQGAVWWDW FHNHTLNYTR PHLVELMYST 240 NVVISNLTFK NSPFWNIHPV YCSQVLVEHL TILAPLDSPN TDGINPDSST NICIKHCYVR 300 NGDDVIVIKS GWDEYGISFA HPSSNISITN ITGETRGGAG IAIGSEMSGG ISEVRAERLR 360 IVNSLHGIRI KTAPGRGGYV RNVYIADVSM HNVSMAIRIT GNYGEHPDNN YDRNALPMIS 420 NITIENVVGI NVGIAGILEG IEGDNFSSIC ISNVSLSVQS MHPWNCSLIQ GYSNSVIPES 480 CDQLRTDCGQ TPVCYNGGSP SAVRAQAPMH KPSTSSLLNS LLKLSSL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-24 | 92 | 429 | 356 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-27 | 86 | 482 | 430 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-30 | 93 | 437 | 354 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-37 | 199 | 429 | 238 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-52 | 95 | 437 | 373 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF99735.1 | 0 | 69 | 527 | 1 | 460 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACN28107.1 | 0 | 59 | 519 | 7 | 467 | unknown [Zea mays] |
RefSeq | NP_001051812.1 | 0 | 59 | 527 | 7 | 476 | Os03g0833800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151479.1 | 0 | 59 | 519 | 7 | 467 | polygalacturonase [Zea mays] |
RefSeq | XP_002463589.1 | 0 | 69 | 527 | 1 | 459 | hypothetical protein SORBIDRAFT_01g002550 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-40 | 93 | 453 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-40 | 93 | 453 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-40 | 93 | 453 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-40 | 93 | 453 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-20 | 139 | 460 | 52 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |