Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a023393m |
Family | GH28 |
Protein Properties | Length: 431 Molecular Weight: 46006.7 Isoelectric Point: 6.6125 |
Chromosome | Chromosome/Scaffold: 51 Start: 960955 End: 962615 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 68 | 412 | 0 |
ASDGGAQLIVPPGKWLTGSFNLTSYFTLYIHKDAVLLASQDESEYPLIDPLPSYGNAAGKRFAGLIFGTNLENVVVTGGNGTIDGQGEIWWKKFKSHKLK NTRPALIEIMNSTIVQITNLTMINSPSSHVHPTYSNGVIIESLTIIAPTDSPNTVGINPDSCEDTRIVRCYIVSGDDCVAVKSGLDQYGIKYDKPTESLA IRRLTCTSPNNAAIALGSEMSGGIQDVRADGVHAVNCKAAVRIETAPGRGGYVKEVYFRNVTLDAVKYAFWLTASNGPHPDEGFDRKALPEVKNITLMNV VGKNVSMVGNLAGIAGDPFIGICISNVTVEMAAEKKLPWNCSDVS |
Full Sequence |
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Protein Sequence Length: 431 Download |
MLLQILEGFV ICLVLGLVCV SGAEKVEYKA FECRKHSAVL TDFGGKGDGV TSNTAAFKAA 60 IANLSKLASD GGAQLIVPPG KWLTGSFNLT SYFTLYIHKD AVLLASQDES EYPLIDPLPS 120 YGNAAGKRFA GLIFGTNLEN VVVTGGNGTI DGQGEIWWKK FKSHKLKNTR PALIEIMNST 180 IVQITNLTMI NSPSSHVHPT YSNGVIIESL TIIAPTDSPN TVGINPDSCE DTRIVRCYIV 240 SGDDCVAVKS GLDQYGIKYD KPTESLAIRR LTCTSPNNAA IALGSEMSGG IQDVRADGVH 300 AVNCKAAVRI ETAPGRGGYV KEVYFRNVTL DAVKYAFWLT ASNGPHPDEG FDRKALPEVK 360 NITLMNVVGK NVSMVGNLAG IAGDPFIGIC ISNVTVEMAA EKKLPWNCSD VSGISSGVSP 420 KACDLLPEKR E |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-20 | 39 | 333 | 305 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-28 | 73 | 336 | 273 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-28 | 40 | 397 | 370 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-31 | 40 | 420 | 399 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 4.0e-49 | 18 | 376 | 384 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002273177.1 | 0 | 11 | 430 | 4 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 24 | 429 | 39 | 448 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303605.1 | 0 | 14 | 429 | 12 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327490.1 | 0 | 11 | 429 | 4 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 27 | 431 | 42 | 450 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6.00036e-42 | 40 | 399 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6.00036e-42 | 40 | 399 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6.00036e-42 | 40 | 399 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6.00036e-42 | 40 | 399 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000001 | 82 | 333 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |