Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 900877 |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 51764.7 Isoelectric Point: 8.5683 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 436 | 0 |
DGGVQLIVPPGKWLTGSFNLSSHFTLFIQKGATILASQDESEYPVVAPLPSYGQGRDAAGPTFASLISGTNLTDVVITGNNGTINGQGKYWWVKYRSGGF KNITRPYTIEIMFSQNVQISNITIIDSPAWNIHPVYCNNVIVKGVTILAPIDSPNTDGINPDSCTNTLIEDCYVVSGDDCIAVKSGWDQFGIKVGMPTKQ LSIRRLTCISPDSAGIALGSEMSGGIKDVRIEDITLLQTQSAIRIKTAVGRGGYVKDIFARRFTMKTMKYVFWMSGAYNQHPASGFDPKAMPEITNINYR DMTADNVTQPARLDGFKNDPFTKICMSNIKIDLAAEPKKLLWNCTNISG |
Full Sequence |
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Protein Sequence Length: 478 Download |
MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLGCKG KTNIEYMALN CRKHTAVLTE 60 FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW LTGSFNLSSH FTLFIQKGAT 120 ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV 180 KYRSGGFKNI TRPYTIEIMF SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS 240 PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTKQLSI RRLTCISPDS 300 AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW 360 MSGAYNQHPA SGFDPKAMPE ITNINYRDMT ADNVTQPARL DGFKNDPFTK ICMSNIKIDL 420 AAEPKKLLWN CTNISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 7.0e-19 | 60 | 439 | 404 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-23 | 55 | 418 | 375 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-24 | 58 | 443 | 399 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-25 | 174 | 434 | 266 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-51 | 56 | 353 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC63679.1 | 0 | 12 | 477 | 1 | 466 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | ABK28510.1 | 0 | 1 | 477 | 1 | 477 | unknown [Arabidopsis thaliana] |
RefSeq | NP_179968.2 | 0 | 1 | 477 | 1 | 477 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_190464.1 | 0 | 12 | 475 | 1 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002513653.1 | 0 | 19 | 477 | 16 | 471 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 58 | 421 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 58 | 421 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 58 | 421 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 58 | 421 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-17 | 100 | 418 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |