Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g53430.1 |
Family | GH28 |
Protein Properties | Length: 480 Molecular Weight: 51810.4 Isoelectric Point: 6.3431 |
Chromosome | Chromosome/Scaffold: 1 Start: 51777794 End: 51781109 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 411 | 0 |
ANKGGAQLFVPAGRWLTGSFSLVSHLTVSLDKDAVILGSPDSSDWPVIDPLPSYGRGRELPGKRHQSLIFGSNLTDVIITGANGTIDGQGEIWWNWFHNH TLNYTRPPLVEFMYSTRVVVSNLTFTNSPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSTNVCIEDCYIRNGDDIVVIKSGWDEYGISFAYPSS NISIQNITGQTRSSAGIALGSEMSGGISNVRAVGIRIVNSVHGIRIKTAPGRGGYVKNVYIADVSMDNVSIAIRITANYGEHPDDKYDKNALPIISNITI KNVIGANIGVAGMLQGIQGDSFSNICLSNVTLSTKSMD |
Full Sequence |
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Protein Sequence Length: 480 Download |
MSRSASIFQA LLVFTTVAAE IQWSSVSGMY CKDLTASVYR PHSVSITEFG AVGDGMTRNT 60 KAFQNAIFYL SSFANKGGAQ LFVPAGRWLT GSFSLVSHLT VSLDKDAVIL GSPDSSDWPV 120 IDPLPSYGRG RELPGKRHQS LIFGSNLTDV IITGANGTID GQGEIWWNWF HNHTLNYTRP 180 PLVEFMYSTR VVVSNLTFTN SPFWNIHPVY CSQVLVQHLT ILAPISSPNT DGIDPDSSTN 240 VCIEDCYIRN GDDIVVIKSG WDEYGISFAY PSSNISIQNI TGQTRSSAGI ALGSEMSGGI 300 SNVRAVGIRI VNSVHGIRIK TAPGRGGYVK NVYIADVSMD NVSIAIRITA NYGEHPDDKY 360 DKNALPIISN ITIKNVIGAN IGVAGMLQGI QGDSFSNICL SNVTLSTKSM DPWNCSLVEG 420 YSNSVSPEIC EELRTNPGPD QVCYDGNYLA SAEVPSQAPQ KSSASRLLNP FHKLASVRA* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-26 | 36 | 381 | 366 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-26 | 40 | 352 | 327 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-31 | 142 | 416 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 6.0e-32 | 42 | 380 | 352 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 4.0e-52 | 44 | 356 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR35653.1 | 0 | 1 | 471 | 8 | 481 | unknown [Zea mays] |
GenBank | EEC81792.1 | 0 | 1 | 477 | 30 | 504 | hypothetical protein OsI_25505 [Oryza sativa Indica Group] |
GenBank | EEE66877.1 | 0 | 1 | 477 | 30 | 504 | hypothetical protein OsJ_23693 [Oryza sativa Japonica Group] |
RefSeq | NP_001151479.1 | 0 | 1 | 471 | 1 | 469 | polygalacturonase [Zea mays] |
RefSeq | XP_002459610.1 | 0 | 20 | 475 | 36 | 494 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 42 | 406 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 42 | 406 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 42 | 406 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 42 | 406 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-18 | 88 | 409 | 52 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |