| APIS family ID | APIS043 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN023 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF13876.9,PF11195.11 | |||||||||||||
| Phrog | phrog_3934,phrog_872,phrog_322,phrog_34966,phrog_4435,phrog_9467,phrog_1048,phrog_16684 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Pasteurella; | |||||||||||||
| Gene Location | Start: 26773; End: 27402; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MH238467 | 24175 | 24771 | + | MH238467_00046 | 198 | 23158.93 | 23158.93 | 10.5456 | NinG/ Rap DNA junction specific endonuclease | phrog_4916 ; phrog_171 ; phrog_12986 ; phrog_5034 | PF05766.15 |
| MH238467 | 24773 | 25234 | + | MH238467_00047 | 153 | 17812.27 | 17812.27 | 8.4457 | anti-termination protein Q-like protein | phrog_943 ; phrog_79 | PF06530.15 |
| MH238467 | 25560 | 25820 | + | MH238467_00049 | 86 | 10019.90 | 10019.90 | 10.4737 | holin | phrog_1350 ; phrog_20 ; phrog_4237 | PF16080.8 |
| MH238467 | 25817 | 26347 | + | MH238467_00050 | 176 | 19668.67 | 19668.67 | 8.8141 | endolysin | phrog_26102 ; phrog_7 ; phrog_35759 ; phrog_10457 ; phrog_33083 ; phrog_7910 | PF00959.22 |
| MH238467 | 26320 | 26643 | + | MH238467_00051 | 107 | 12125.83 | 12125.83 | 8.0134 | Rz-like spanin | ||
| MH238467 | 26773 | 27402 | + | MH238467_00052 | 209 | 23827.33 | 23827.33 | 7.8802 | hypothetical protein | phrog_16684 ; phrog_1048 ; phrog_34966 ; phrog_30130 ; phrog_3934 ; phrog_872 ; phrog_4435 ; phrog_322 ; phrog_9467 | PF11195.11 |
| MH238467 | 27511 | 27888 | + | MH238467_00053 | 125 | 14291.11 | 14291.11 | 4.3559 | hypothetical protein | phrog_1453 | |
| MH238467 | 28011 | 28247 | - | MH238467_00054 | 78 | 9320.53 | 9320.53 | 9.6053 | hypothetical protein | phrog_3865 ; phrog_4268 ; phrog_18309 | PF13936.9 |
| MH238467 | 28244 | 28540 | - | MH238467_00055 | 98 | 10952.57 | 10952.57 | 5.6792 | hypothetical protein | phrog_9437 | |
| MH238467 | 28674 | 29378 | + | MH238467_00056 | 234 | 27241.55 | 27241.55 | 8.7215 | phosphoadenosine phosphosulfate reductase | phrog_2302 | |
| MH238467 | 29362 | 29790 | + | MH238467_00057 | 142 | 16588.96 | 16588.96 | 8.0008 | hypothetical protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP003632401232.pdb | 24 | 209 | 13 | 199 | 0.4893 | 0.4715 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS043 | MH238467_00052 | 7 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS029 | 4.57E-40 | 106 | 199 | 12 | 102 | Thoeris | YP_002300464.1 |
| APIS052 | 3.05E-37 | 28 | 199 | 17 | 163 | IMGVR_UViG_3300012991_000489|3300012991|Ga0157148_10003866 | |
| APIS079 | 3.13E-36 | 30 | 199 | 29 | 172 | MF042361_00008 | |
| APIS045 | 1.43E-22 | 110 | 198 | 21 | 115 | IMGVR_UViG_3300005805_000580|3300005805|Ga0079957_100145420 |