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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS052
Inhibited defense system
CLAN ID CLAN031
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300012991_000489|3300012991|Ga0157148_10003866
gene_page: 164 18071.2 4.1386 -11.5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains PF11195.11
Phrog phrog_30130,phrog_872,phrog_9467,phrog_1048
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.6 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP003620421190.pdb 5 164 6 142 0.8136 0.7311
MGYP000527072697.pdb 6 164 6 167 0.7617 0.7177
MGYP000948547793.pdb 13 164 1 135 0.7889 0.6935
MGYP000209244542.pdb 6 164 6 167 0.7292 0.6819
MGYP000914285054.pdb 77 163 1 87 0.8974 0.677
MGYP001070471033.pdb 72 164 1 89 0.8744 0.6641
MGYP003456190020.pdb 73 164 1 88 0.8638 0.6565
MGYP000632396215.pdb 6 164 6 152 0.7129 0.6551
MGYP000038000667.pdb 77 164 1 86 0.8574 0.6541
MGYP003410594368.pdb 14 164 1 116 0.7876 0.6537

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS052 IMGVR_UViG_3300012991_000489|3300012991|Ga0157148_10003866 3 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       download full data without filtering help

Clan ID: CLAN031

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS079 3.78E-65 1 164 13 172 MF042361_00008
APIS029 1.09E-39 74 164 15 102 Thoeris YP_002300464.1
APIS043 2.00E-37 72 164 117 209 MH238467_00052
APIS045 2.80E-26 77 163 23 115 IMGVR_UViG_3300005805_000580|3300005805|Ga0079957_100145420
APIS070 5.30E-24 1 75 12 76 IMGVR_UViG_3300037297_000240|3300037297|Ga0394146_0000041_21955_22497

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300011982_000033|3300011982|Ga0119773_100000123 53.049 2.47e-49 164 99% IMGVR PF11195 phrog_30130 phrog_872 phrog_32732 phrog_9467 phrog_1048
IMGVR_UViG_3300012991_000489|3300012991|Ga0157148_10003866 100.000 4.27e-119 341 100% IMGVR PF11195 phrog_30130 phrog_872 phrog_9467 phrog_1048
IMGVR_UViG_3300031760_001173|3300031760|Ga0326513_100026522 44.848 9.90e-44 133 100% IMGVR PF11195 phrog_11049 phrog_30130 phrog_872 phrog_32732 phrog_9467 phrog_1048