| APIS family ID | APIS045 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN031 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF11195.11 | |||||||||||||
| Phrog | phrog_30130,phrog_872,phrog_1048 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP003602489207.pdb | 19 | 115 | 1 | 94 | 0.911 | 0.8141 |
| MGYP001502806657.pdb | 19 | 115 | 1 | 93 | 0.9011 | 0.803 |
| MGYP003370295980.pdb | 23 | 115 | 1 | 94 | 0.8961 | 0.7989 |
| MGYP001606264746.pdb | 19 | 115 | 1 | 92 | 0.8993 | 0.7952 |
| MGYP003299292040.pdb | 19 | 115 | 1 | 94 | 0.8821 | 0.7868 |
| MGYP000384891912.pdb | 23 | 115 | 1 | 92 | 0.8905 | 0.7867 |
| MGYP001616459512.pdb | 23 | 115 | 1 | 84 | 0.9149 | 0.781 |
| MGYP000611009890.pdb | 18 | 115 | 1 | 96 | 0.873 | 0.7805 |
| MGYP000506228510.pdb | 19 | 115 | 1 | 94 | 0.8728 | 0.779 |
| MGYP003299842018.pdb | 19 | 115 | 1 | 97 | 0.8585 | 0.7777 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS045 | IMGVR_UViG_3300005805_000580|3300005805|Ga0079957_100145420 | 5 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS029 | 2.46E-31 | 20 | 115 | 15 | 101 | Thoeris | YP_002300464.1 |
| APIS052 | 1.03E-25 | 19 | 115 | 73 | 162 | IMGVR_UViG_3300012991_000489|3300012991|Ga0157148_10003866 | |
| APIS079 | 4.67E-24 | 20 | 115 | 85 | 171 | MF042361_00008 | |
| APIS043 | 3.38E-22 | 21 | 115 | 120 | 208 | MH238467_00052 |
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300005805_000580|3300005805|Ga0079957_100145420 | 100.000 | 1.51e-77 | 232 | 100% | IMGVR | PF11195 | phrog_30130 phrog_872 phrog_1048 | ||
| IMGVR_UViG_3300016471_000437|3300016471|Ga0186767_10096683 | 98.261 | 7.72e-76 | 228 | 100% | IMGVR | PF11195 | phrog_30130 phrog_872 phrog_1048 | ||
| IMGVR_UViG_3300017785_005335|3300017785|Ga0181355_10084467 | 83.478 | 9.72e-59 | 184 | 98% | IMGVR | PF11195 | phrog_30130 phrog_872 phrog_1048 | ||
| IMGVR_UViG_3300031857_001469|3300031857|Ga0315909_1000259022 | 100.000 | 2.00e-77 | 232 | 100% | IMGVR | PF11195 | phrog_30130 phrog_872 phrog_1048 | ||
| IMGVR_UViG_3300037508_000466|3300037508|Ga0335038_0000137_48885_49223 | 85.217 | 1.18e-60 | 189 | 98% | IMGVR | PF11195 | phrog_30130 phrog_872 phrog_1048 |