dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS070

Inhibited defense system

CLAN ID

CLAN031

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_21955_22497	gene_page:	180	20758.7	7.5494	4

Phage property

Phage	Assembly id
	IMGVR_UViG_3300037297_000240

PMID/References

PDB structures

;

Pfam domains

Phrog

phrog_22140,phrog_872,phrog_32732,phrog_23843,phrog_2428,phrog_9467

Host taxa

Gene Location

Start: 21955; End: 22497; Strand: -

Description

Note

This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029 which has seed protein.

Seed genomic context Download table help

Genome accession	Start	End	Strand	Protein ID	Length	Molecular weight	Charge	Isoelectric point	Function	Phrog	PFAM
IMGVR_UViG_3300037297_000240	19535	20032	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_19535_20032	165	19748.78	3.5	8.8288	hypothetical protein
IMGVR_UViG_3300037297_000240	20014	20577	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_20014_20577	187	22252.33	1.5	6.9574	spore coat polysaccharide biosynthesis protein SpsF
IMGVR_UViG_3300037297_000240	20597	21118	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_20597_21118	173	20685.69	-0.5	5.9876	predicted acetyltransferase
IMGVR_UViG_3300037297_000240	21115	21729	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_21115_21729	204	24030.81	0.0	6.4775	sialic acid synthase SpsE
IMGVR_UViG_3300037297_000240	21826	21904	+	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_21826_21904					tRNA_Ile_GAT
IMGVR_UViG_3300037297_000240	21955	22497	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_21955_22497	180	20758.65	4.0	7.5494	hypothetical protein	phrog_2428 ; phrog_23843 ; phrog_32732 ; phrog_15810 ; phrog_872 ; phrog_22140 ; phrog_9467 ; phrog_1454
IMGVR_UViG_3300037297_000240	22497	23084	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_22497_23084	195	23145.33	-13.0	4.4409	hypothetical protein	phrog_2259	PF16473.8
IMGVR_UViG_3300037297_000240	23106	23636	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_23106_23636	176	20478.34	-3.0	4.9225	hypothetical protein	phrog_24725
IMGVR_UViG_3300037297_000240	23638	23976	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_23638_23976	112	13360.21	2.0	9.1567	hypothetical protein	phrog_26268
IMGVR_UViG_3300037297_000240	23997	24422	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_23997_24422	141	16381.66	0.0	6.4869	single-strand DNA-binding protein	phrog_44	PF00436.28
IMGVR_UViG_3300037297_000240	24376	24471	-	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_24376_24471	31	3395.85	-2.0	4.0624	DNA-directed RNA polymerase subunit RPC12/RpoP

Seed genomic context- JBrowse

Predicted 3D structure by alphafold2 with pTM = 0.58 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS070	IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_21955_22497	8	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families download full data without filtering help

Clan ID: CLAN031

Hit APIS family	E-Value	Query Start	Query End	Hit Start	Hit End	Immune system	Seed protein
APIS024	1.48E-64	37	180	5	163	Thoeris	UPI13470.1
APIS061	9.23E-59	70	180	79	197		IMGVR_UViG_3300024337_000617\|3300024337\|Ga0255060_100056963
APIS052	5.60E-23	1	64	3	76		IMGVR_UViG_3300012991_000489\|3300012991\|Ga0157148_10003866
APIS079	1.31E-21	1	64	13	87		MF042361_00008

Family members, sources, and their hosts help

Results of representative protein blast against members.
Member	pident	evalue	bitscore	qcovs	host	SourceDB	Phrog
IMGVR_UViG_3300018427_002137\|3300018427\|Ga0187903_1000072118	50.000	2.76e-49	166	100%	Faecousia	IMGVR	phrog_11049 phrog_22140 phrog_872 phrog_32732 phrog_23843 phrog_2428 phrog_9467
IMGVR_UViG_3300035130_000083\|3300035130\|Ga0373574_0000435_10693_11244	47.778	1.04e-45	157	96%		IMGVR	phrog_18865 phrog_872 phrog_32732 phrog_23843 phrog_2428 phrog_9467
IMGVR_UViG_3300035136_000021\|3300035136\|Ga0373584_0000007_3175_3741	51.852	5.88e-53	175	100%		IMGVR	phrog_18865 phrog_22140 phrog_872 phrog_32732 phrog_23843 phrog_2428 phrog_9467
IMGVR_UViG_3300037297_000240\|3300037297\|Ga0394146_0000041_21955_22497	100.000	4.70e-131	372	100%		IMGVR	phrog_22140 phrog_872 phrog_32732 phrog_23843 phrog_2428 phrog_9467
IMGVR_UViG_3300038455_000036\|3300038455\|Ga0436474_0000123_60665_61252	55.978	2.38e-65	207	93%		IMGVR	phrog_872 phrog_32732 phrog_23843 phrog_2428 phrog_9467
IMGVR_UViG_3300042923_000088\|3300042923\|Ga0456365_0005073_16093_16656	47.027	2.90e-42	148	98%		IMGVR	phrog_872 phrog_32732 phrog_23843 phrog_2428 phrog_9467
IMGVR_UViG_3300048914_000002\|3300048914\|Ga0496111_0012093_251_823	42.487	1.56e-38	139	100%		IMGVR	phrog_872 phrog_32732 phrog_23843 phrog_2428 phrog_9467
IMGVR_UViG_651324002_000003\|651324002\|651579585	62.626	4.63e-42	130	54%	Acetonema longum	IMGVR	phrog_15810 phrog_4502 phrog_22140 phrog_1810 phrog_4159 phrog_419 phrog_23843 phrog_2428