Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS061
Inhibited defense system
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
gene_page: 200 22213.8 10.4089 16.5
Phage property
Phage Assembly id
PDB structures ;
Pfam domains
Phrog phrog_22140,phrog_23843,phrog_2428
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Note This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.55 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS061 IMGVR_UViG_3300024337_000617|3300024337|Ga0255060_100056963 9 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       download full data without filtering help

Clan ID: CLAN031

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS024 9.00E-67 74 200 46 163 Thoeris UPI13470.1
APIS070 2.83E-64 74 200 80 199 IMGVR_UViG_3300037297_000240|3300037297|Ga0394146_0000041_21955_22497

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300014204_008563|3300014204|Ga0172381_100370182 55.224 6.32e-44 137 64% IMGVR PF02026 phrog_23843 phrog_2428
IMGVR_UViG_3300021387_000538|3300021387|Ga0223845_106910307 76.667 8.53e-91 271 90% IMGVR phrog_23843 phrog_2428
IMGVR_UViG_3300024337_000617|3300024337|Ga0255060_100056963 100.000 2.31e-144 408 100% IMGVR phrog_22140 phrog_23843 phrog_2428
IMGVR_UViG_3300025682_000358|3300025682|Ga0209718_10158121 56.154 3.33e-46 143 58% IMGVR PF02026 phrog_22140 phrog_23843 phrog_2428
IMGVR_UViG_3300028797_000133|3300028797|Ga0265301_10000182110 80.693 2.01e-110 322 100% IMGVR phrog_22140 phrog_23843 phrog_2428
IMGVR_UViG_3300028832_000435|3300028832|Ga0265298_1000162546 78.713 1.69e-108 317 100% IMGVR phrog_23843 phrog_2428
IMGVR_UViG_3300028914_000002|3300028914|Ga0265300_10000021350 66.837 5.86e-84 254 100% IMGVR phrog_2428
IMGVR_UViG_3300028914_000054|3300028914|Ga0265300_10000020228 73.000 7.06e-94 279 100% IMGVR phrog_23843 phrog_2428
IMGVR_UViG_3300028914_000075|3300028914|Ga0265300_1000017119 75.122 5.05e-100 295 100% IMGVR phrog_23843 phrog_2428