| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003281 |
| Family | GH17 |
| Protein Properties | Length: 409 Molecular Weight: 45396.8 Isoelectric Point: 7.5282 |
| Chromosome | Chromosome/Scaffold: 07 Start: 12367767 End: 12369076 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH17 | 44 | 348 | 0 |
| SVEVSPERIVAKIVSMEIEAVRLLDPNPETIRAFASTNVSLFLSVPNPLVPMLASHRSHAFEWVKLHVLPFHNRTKISMISVGDDVSLADAPPPLFLLRA IRNVRRSLVNLGIETVSVSTTFSFFSIIPSPFPPSLARFESPNGDVIIKPILEFLEKTNSSFVVKLYPYYIDSSVHSGFAFFEDPFSYVDDSSIIQVRYG NLFDVMVDAVVRSLAVLGHESLPVVVAETGWPSWSSNSSEVYATPKCSQRFLNALVDHLRAGKGTPLRKEGVSEVYIFELCDKQQSERTWGLLDYHLNTK MNITF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 409 Download |
| MKILKCDLLL IVIAVTVVVL MAPPTISAAK VGVTYSTPDF SSGSVEVSPE RIVAKIVSME 60 IEAVRLLDPN PETIRAFAST NVSLFLSVPN PLVPMLASHR SHAFEWVKLH VLPFHNRTKI 120 SMISVGDDVS LADAPPPLFL LRAIRNVRRS LVNLGIETVS VSTTFSFFSI IPSPFPPSLA 180 RFESPNGDVI IKPILEFLEK TNSSFVVKLY PYYIDSSVHS GFAFFEDPFS YVDDSSIIQV 240 RYGNLFDVMV DAVVRSLAVL GHESLPVVVA ETGWPSWSSN SSEVYATPKC SQRFLNALVD 300 HLRAGKGTPL RKEGVSEVYI FELCDKQQSE RTWGLLDYHL NTKMNITFFL DDIPEIEKKS 360 IQLNYLVIVC MLFLAVISTV ATLTCCSNIV SAWKGTPAKR ERKQKKQY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-42 | 48 | 348 | 310 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAT40508.1 | 0 | 49 | 348 | 49 | 371 | Glycosyl hydrolases family 17 protein [Solanum demissum] |
| RefSeq | NP_191137.1 | 0 | 31 | 372 | 31 | 376 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002276218.1 | 0 | 25 | 348 | 26 | 355 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316237.1 | 0 | 50 | 348 | 62 | 363 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530412.1 | 0 | 23 | 343 | 27 | 350 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 6e-32 | 52 | 336 | 18 | 294 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 1aq0_B | 6e-32 | 52 | 336 | 18 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 6e-32 | 52 | 336 | 18 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 3e-29 | 52 | 348 | 19 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_C | 3e-29 | 52 | 348 | 19 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
