Browse dbCAN-PUL Entries

PULID Characterization Method(s) Substrate Organism Publication Publish Date Type Num Genes Num CAZymes CazyFamily
PUL0063 bicinchoninic acid (BCA) reducing-sugar assay, enzyme product analysis, affinity gel electrophoresis, isothermal titration calorimetry xyloglucan Bacteroides ovatus 31420336
Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut Bacteroidetes to Polysaccharide Side Chain Diversity. Appl Environ Microbiol. 2019 Oct 1;85(20). pii: AEM.01491-19. doi: 10.1128/AEM.01491-19. Print 2019 Oct 15.
2019 Oct 15 degradation 16 8 GH3, GH2, GH31, GH9, GH5_4, GH43, GH43_12, GH43_12, GH3
PUL0064 bicinchoninic acid (BCA) reducing-sugar assay, enzyme product analysis, affinity gel electrophoresis, isothermal titration calorimetry xyloglucan Bacteroides cellulosilyticus 31420336
Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut Bacteroidetes to Polysaccharide Side Chain Diversity. Appl Environ Microbiol. 2019 Oct 1;85(20). pii: AEM.01491-19. doi: 10.1128/AEM.01491-19. Print 2019 Oct 15.
2019 Oct 15 degradation 12 4 GH5, GH5_4, GH31, GH2, GH3
PUL0065 bicinchoninic acid (BCA) reducing-sugar assay, enzyme product analysis, affinity gel electrophoresis, isothermal titration calorimetry xyloglucan Bacteroides uniformis 31420336
Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut Bacteroidetes to Polysaccharide Side Chain Diversity. Appl Environ Microbiol. 2019 Oct 1;85(20). pii: AEM.01491-19. doi: 10.1128/AEM.01491-19. Print 2019 Oct 15.
2019 Oct 15 degradation 13 6 GH43_12, GH43, GH5_4, GH5, GH31, GH2, GH3, GH95
PUL0066 bicinchoninic acid (BCA) reducing-sugar assay, enzyme product analysis, affinity gel electrophoresis, isothermal titration calorimetry xyloglucan Bacteroides fluxus 31420336
Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut Bacteroidetes to Polysaccharide Side Chain Diversity. Appl Environ Microbiol. 2019 Oct 1;85(20). pii: AEM.01491-19. doi: 10.1128/AEM.01491-19. Print 2019 Oct 15.
2019 Oct 15 degradation 13 6 GH43_12, GH43, GH5, GH5_4, GH31, GH2, GH3, GH95
PUL0067 bicinchoninic acid (BCA) reducing-sugar assay, enzyme product analysis, affinity gel electrophoresis, isothermal titration calorimetry xyloglucan Dysgonomonas gadei 31420336
Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut Bacteroidetes to Polysaccharide Side Chain Diversity. Appl Environ Microbiol. 2019 Oct 1;85(20). pii: AEM.01491-19. doi: 10.1128/AEM.01491-19. Print 2019 Oct 15.
2019 Oct 15 degradation 11 6 GH2, GH5_4, GH5, GH31, GH95, GH3, GH43_12
PUL0118 qRT-PCR, affinity gel electrophoresis, isothermal titration calorimetry laminarin, beta-glucan Bacteroides uniformis 32265336
Synergy between Cell Surface Glycosidases and Glycan-Binding Proteins Dictates the Utilization of Specific Beta(1,3)-Glucans by Human Gut Bacteroides. mBio. 2020 Apr 7;11(2). pii: mBio.00095-20. doi: 10.1128/mBio.00095-20.
2020 Apr 7 degradation 7 3 CBM6, GH3, GH158, GH16
PUL0125 affinity gel electrophoresis, carbohydrate binding assay, RNA-seq beta-glucan Bacteroides ovatus 31062073, 32801182
Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus. Sharing a beta-Glucan Meal: Transcriptomic Eavesdropping on a Bacteroides ovatus-Subdoligranulum variabile-Hungatella hathewayi Consortium. Cell Mol Life Sci. 2019 Nov;76(21):4319-4340. doi: 10.1007/s00018-019-03115-3. Epub 2019 May 6. Appl Environ Microbiol. 2020 Oct 1;86(20). pii: AEM.01651-20. doi: 10.1128/AEM.01651-20. Print 2020 Oct 1.
2019 Nov,2020 Oct 1 degradation 6 2 GH16, GH3