agarose
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The gelling agent in agar is agarose. It is a polymer found in red algae/seaweeds. It has a disaccharide repeating units (d-galactose beta-1,4-linked to 3,6-anhydro-L-galactose / AHG). Between repeating units, it's alpha-1,3-linked.
References
Li, Jin, et al. "Insights into Algal Polysaccharides: A Review of Their Structure, Depolymerases, and Metabolic Pathways." Journal of Agricultural and Food Chemistry 70.6 (2022): 1749-1765. Click here to redirect detail information.
CAZyme Gene Cluster:
| Substrate | Genome_ID | CGC_ID | CGC_Content | PUL_ID | Species Name |
|---|---|---|---|---|---|
| agarose | MGYG000000013 | MGYG000000013_4|CGC3 |
GH2,CE6,null,1.B.14.6.1,null,null,GH50,GH154|GH88,CBM32|GH43_28,GH154,GH154,GH105,2.A.66.1.32
|
PUL0225 | Bacteroides sp902362375 |
| agarose | MGYG000000013 | MGYG000000013_4|CGC6 |
2.A.66.1.36,null,GH50,GH50,GH2|CBM57,null,null,1.B.14.6.1
|
PUL0225 | Bacteroides sp902362375 |
| agarose | MGYG000000013 | MGYG000000013_9|CGC1 |
1.A.23.1.4,2.A.19.5.2,null,GH154,null,1.B.14.6.1,null,GH30_6,null,GH130,2.A.21.3.8
|
PUL0225 | Bacteroides sp902362375 |
| agarose | MGYG000000043 | MGYG000000043_20|CGC1 |
2.A.1.7.1,null,8.A.5.1.6,null,GH29,null,HTH_AraC+HTH_AraC,8.A.46.1.5,1.B.14.6.1,1.B.14.6.1,GH97
|
PUL0225 | Phocaeicola sp900066455 |
| agarose | MGYG000000044 | MGYG000000044_3|CGC4 |
1.B.14.6.1,null,GH20,null,GH2,GH16_3|GH16
|
PUL0225 | Parabacteroides merdae |
| agarose | MGYG000000044 | MGYG000000044_5|CGC5 |
2.A.1.7.1,1.A.30.1.5,HTH_8,2.A.21.9.1,2.A.13.1.3,GH2
|
PUL0225 | Parabacteroides merdae |
| agarose | MGYG000000053 | MGYG000000053_1|CGC3 |
GH29|CBM32,GH2,null,1.B.14.6.1,null,null,9.B.146.1.4
|
PUL0225 | Alistipes sp002358415 |
| agarose | MGYG000000105 | MGYG000000105_3|CGC8 |
1.B.14.6.1,8.A.46.1.1,null,HTH_AraC,GH2,CE6,null,1.B.14.6.1,null,null,GH50,GH115|GH0,GH2|CBM57,null,GH154|GH88,null,CBM32|GH43_28,null,GH154,GH154,GH105
|
PUL0225 | Bacteroides clarus |
| agarose | MGYG000000135 | MGYG000000135_3|CGC2 |
3.A.1.1.21,3.A.1.1.20,3.A.1.1.25,GH29,LacI,HTH_AraC,GH29,HTH_AraC+HTH_AraC,GH2
|
PUL0225 | Murimonas intestini |
| agarose | MGYG000000138 | MGYG000000138_1|CGC4 |
GH16|GH16_3,GH2,GH20,null,1.B.14.6.1
|
PUL0225 | Parabacteroides johnsonii |
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