Browse dbCAN-PUL Entries

PULID Characterization Method(s) Substrate Organism Publication Publish Date Type Num Genes Num CAZymes CazyFamily
PUL0032 RNA-Seq sucrose Bifidobacterium longum 16523284
A functional analysis of the Bifidobacterium longum cscA and scrP genes in sucrose utilization. Appl Microbiol Biotechnol. 2006 Oct;72(5):975-81. doi: 10.1007/s00253-006-0358-x. Epub 2006 Mar 8.
2006 Oct degradation 3 1 GH13, GH13_18
PUL0037 enzyme activity assay raffinose Streptococcus pneumoniae 31591266
Molecular analysis of an enigmatic Streptococcus pneumoniae virulence factor: The raffinose-family oligosaccharide utilization system. J Biol Chem. 2019 Nov 15;294(46):17197-17208. doi: 10.1074/jbc.RA119.010280. Epub 2019 Oct 7.
2019 Nov 15 degradation 7 2 GH13, GH13_18
PUL0088 Southern Blot raffinose, melibiose, isomaltotriose Streptococcus mutans 8764489
The multiple-sugar metabolism (msm) gene cluster of Streptococcus mutans is transcribed as a single operon. FEMS Microbiol Lett. 1996 Jul 1;140(2-3):261-4. doi: 10.1016/0378-1097(96)00191-7.
1996 Jul 1 degradation 8 3 GH36, GH13_18, GH13
PUL0141 sequence homology analysis sucrose Bifidobacterium animalis subsp. animalis 30306201
Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions. Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10.
2018 Dec degradation 4 1 GH13_18, GH13
PUL0455 clone and expression, genes induced in presence of substrate, enzyme activity assay sucrose Bifidobacterium animalis 12513973
Induction of sucrose utilization genes from Bifidobacterium lactis by sucrose and raffinose. Appl Environ Microbiol. 2003 Jan;69(1):24-32. doi: 10.1128/aem.69.1.24-32.2003.
2003 Jan degradation 3 1 GH13, GH13_18
PUL0486 RT-PCR, sugar utilization assay raffinose Streptococcus pneumoniae 10613841
Regulation of the alpha-galactosidase activity in Streptococcus pneumoniae: characterization of the raffinose utilization system. Genome Res. 1999 Dec;9(12):1189-97. doi: 10.1101/gr.9.12.1189.
1999 Dec degradation 8 2 GH13, GH13_18, GH36
PUL0575 microarray, growth assay, gene deletion mutant and growth assay raffinose Enterococcus faecium 20946531
A genetic element present on megaplasmids allows Enterococcus faecium to use raffinose as carbon source. Environ Microbiol. 2011 Feb;13(2):518-28. doi: 10.1111/j.1462-2920.2010.02355.x. Epub 2010 Oct 15.
2011 Feb degradation 11 2 GH13, GH13_18, GH13_31, GH13, GH36, GH4
PUL0584 microarray melibiose Lactococcus lactis 23530958
Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods. BMC Microbiol. 2013 Mar 26;13:68. doi: 10.1186/1471-2180-13-68.
2013 Mar 26 degradation 11 2 GH13, GH13_18, GH36