Browse dbCAN-PUL Entries

PULID Characterization Method(s) Substrate Organism Publication Publish Date Type Num Genes Num CAZymes CazyFamily
PUL0007 sequence homology analysis galactan Leuconostoc gelidum 27274361
Complete genome sequence of Leuconostoc gelidum subsp. gasicomitatum KG16-1, isolated from vacuum-packaged vegetable sausages. Stand Genomic Sci. 2016 Jun 7;11:40. doi: 10.1186/s40793-016-0164-8. eCollection 2016.
2016 degradation 8 2 GH53, GH42
PUL0209 enzyme activity assay, gene deletion mutant and growth assay galactan Dickeya dadantii 17644603
Characterization of the Erwinia chrysanthemi Gan locus, involved in galactan catabolism. J Bacteriol. 2007 Oct;189(19):7053-61. doi: 10.1128/JB.00845-07. Epub 2007 Jul 20.
2007 Oct degradation 9 2 GH42, GH53
PUL0283 microarray, high performance anion exchange chromatography, liquid chromatography and mass spectrometry galactooligosaccharide Bifidobacterium breve 23199239
Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003. Microb Biotechnol. 2013 Jan;6(1):67-79. doi: 10.1111/1751-7915.12011. Epub 2012 Dec 2.
2013 Jan degradation 6 1 GH42, GH53, CBM61
PUL0297 gene trait matching exercise galactan Bifidobacterium longum 29310579
Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains. BMC Genomics. 2018 Jan 8;19(1):33. doi: 10.1186/s12864-017-4388-9.
2018 Jan 8 degradation 9 2 GH42, GH53, CBM61
PUL0304 RT-qPCR, isothermal titration calorimetry, enzyme activity assay, gene deletion mutant and growth assay galactan Bacteroides thetaiotaomicron 29255254
Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides. Nat Microbiol. 2018 Feb;3(2):210-219. doi: 10.1038/s41564-017-0079-1. Epub 2017 Dec 18.
2018 Feb degradation 7 2 GH2, GH53
PUL0306 RT-qPCR, isothermal titration calorimetry, enzyme activity assay, gene deletion mutant and growth assay galactan Bacteroides ovatus 29255254
Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides. Nat Microbiol. 2018 Feb;3(2):210-219. doi: 10.1038/s41564-017-0079-1. Epub 2017 Dec 18.
2018 Feb degradation 7 3 GH2, GH53, GH147
PUL0323 fitness contribution assay, insertion sequencing galactan Bacillus subtilis subsp. subtilis 28617843
Characterization of the regulation of a plant polysaccharide utilization operon and its role in biofilm formation in Bacillus subtilis. PLoS One. 2017 Jun 15;12(6):e0179761. doi: 10.1371/journal.pone.0179761. eCollection 2017.
2017 degradation 6 2 CBM61, GH53, GH42
PUL0360 gene deletion mutant and growth assay lactose, host glycan Bacteroides thetaiotaomicron 16968696
Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period. J Biol Chem. 2006 Nov 24;281(47):36269-79. doi: 10.1074/jbc.M606509200. Epub 2006 Sep 12.
2006 Nov 24 degradation 6 2 GH2, GH53
PUL0427 microarray plant polysaccharide Bacteroides ovatus 22205877
Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PLoS Biol. 2011 Dec;9(12):e1001221. doi: 10.1371/journal.pbio.1001221. Epub 2011 Dec 20.
2011 Dec degradation 6 2 GH53, GH147
PUL0534 RNA-Seq pectin Bacteroides cellulosilyticus 23976882
Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome. PLoS Biol. 2013;11(8):e1001637. doi: 10.1371/journal.pbio.1001637. Epub 2013 Aug 20.
2013 degradation 9 5 GH133, GH0, GH13, GH13_10, GH2, GH53, GH147
PUL0566 microarray, qPCR pectin Bacteroides ovatus 22205877, 29255254
Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides. PLoS Biol. 2011 Dec;9(12):e1001221. doi: 10.1371/journal.pbio.1001221. Epub 2011 Dec 20. Nat Microbiol. 2018 Feb;3(2):210-219. doi: 10.1038/s41564-017-0079-1. Epub 2017 Dec 18.
2011 Dec,2018 Feb degradation 7 3 GH2, GH53, GH147