| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10002943m |
| Family | PL1 |
| Protein Properties | Length: 298 Molecular Weight: 32985.9 Isoelectric Point: 10.0127 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2868725 End: 2869933 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 38 | 240 | 0 |
| GKKWITFKRNMKIKLHKPLLISSFTTLDGRGVSVHISGPACLIVYKATDVIIHGLKIHDCKAHPPSSVMGPDSKIIQLGQVDGDAIRLVTAKKVWIDHNT LYDCEDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRDQDMRVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIGGSMSPRVKSESNY FVA | |||
| Full Sequence |
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| Protein Sequence Length: 298 Download |
| MTGNIGKGVT QYKVTDPSDD PLKPKPGTLR YAATLVKGKK WITFKRNMKI KLHKPLLISS 60 FTTLDGRGVS VHISGPACLI VYKATDVIIH GLKIHDCKAH PPSSVMGPDS KIIQLGQVDG 120 DAIRLVTAKK VWIDHNTLYD CEDGLLDVTR GSTDVTVSNN WFRNQDKVML LGHDDGYVRD 180 QDMRVTVVFN HFGPNCNQRM PRVRHGYAHV ANNYYQGWTQ YAIGGSMSPR VKSESNYFVA 240 PKSGNKEVLE KHALITAQIK GSQSQKLKPL KNSQVQLEPC TAPETPSVRA TTLNMTF* 300 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.009 | 85 | 164 | 82 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 2.0e-26 | 58 | 238 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-57 | 60 | 238 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-75 | 47 | 242 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 1 | 248 | 1 | 248 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_196490.1 | 0 | 1 | 297 | 1 | 297 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002299118.1 | 0 | 1 | 260 | 32 | 292 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 254 | 32 | 285 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 248 | 60 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 6 | 251 | 35 | 282 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 6 | 251 | 35 | 282 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 5e-18 | 56 | 238 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 7e-17 | 80 | 244 | 83 | 252 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmv_A | 7e-17 | 80 | 244 | 83 | 252 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FD757999 | 195 | 54 | 248 | 0 |
| DR808308 | 225 | 1 | 218 | 0 |
| DT575750 | 160 | 92 | 251 | 0 |
| EB425777 | 250 | 12 | 260 | 0 |
| BQ505865 | 256 | 6 | 260 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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