| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.003G218200.1 |
| Family | PL1 |
| Protein Properties | Length: 353 Molecular Weight: 39178.6 Isoelectric Point: 10.0046 |
| Chromosome | Chromosome/Scaffold: 03 Start: 21432897 End: 21434384 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 72 | 271 | 0 |
| WITFERNMDIKLEKPLLISSYTAIDGRGVDVGIEGFGCFLVYKATDVIIHGLRIHHCNAQGPSTVMGPDGKQMQLGQMDGDAIRLVSASKIWIDHNTLYS CQDGLLDVTRGSTFVTVSNNWFRDQDKVMLLGHDDGFLRDKNMKVTVAFNRFGPNCNQRMPRIRHGYAHVANNLYRGWEQYAIGGSMSPSIKSESNYFIA | |||
| Full Sequence |
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| Protein Sequence Length: 353 Download |
| MNAIDQCWKP SPNWRRSRQQ LASCSVGFAG KMTNNVGRDV VMYKVTDPSD DPVNPKQGTL 60 RHGATMITGK VWITFERNMD IKLEKPLLIS SYTAIDGRGV DVGIEGFGCF LVYKATDVII 120 HGLRIHHCNA QGPSTVMGPD GKQMQLGQMD GDAIRLVSAS KIWIDHNTLY SCQDGLLDVT 180 RGSTFVTVSN NWFRDQDKVM LLGHDDGFLR DKNMKVTVAF NRFGPNCNQR MPRIRHGYAH 240 VANNLYRGWE QYAIGGSMSP SIKSESNYFI APTSGKKEVT WRNGIGGKSK PWNFYSIGDL 300 FTNGASFFQT GRRGMAKPNY NKEQSFKVGD AKYVKALTSS AGALKCSRTS RC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-29 | 73 | 269 | 211 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-57 | 86 | 269 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-68 | 78 | 272 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 32 | 352 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 352 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 352 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 352 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 279 | 29 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 344 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 344 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 3e-19 | 87 | 269 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 5e-17 | 59 | 270 | 42 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 2e-16 | 94 | 280 | 82 | 257 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 225 | 123 | 347 | 0 |
| DR808308 | 256 | 2 | 250 | 0 |
| FD757999 | 228 | 85 | 312 | 0 |
| HO778688 | 355 | 2 | 353 | 0 |
| FG606120 | 326 | 2 | 324 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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