| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma11g06761.1 |
| Family | PL1 |
| Protein Properties | Length: 392 Molecular Weight: 43910.5 Isoelectric Point: 9.9159 |
| Chromosome | Chromosome/Scaffold: 11 Start: 4778744 End: 4780269 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 110 | 310 | 0 |
| VWITFQRDMHIKLERPLLISSFTAIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGVVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLY NCQDGLLDVTRGSTDVTISNNWFRDQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFI A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| MVSHVINHIL WRFVLIIVII TLYTPNLSAA KQSKINGLKM NVIDRCWRLN PEWRRHRPQL 60 ATCSVGYTGK MTNNIGKDLI HYIVIDPSDD PINPKRGTLR YGASVIQGKV WITFQRDMHI 120 KLERPLLISS FTAIDGRGVN VHIANNACLM IFKATNIIIH GIRVHHCKPQ APGVVMGPEG 180 KVIPLGHVDG DAIRLVTASK IWIDHNTLYN CQDGLLDVTR GSTDVTISNN WFRDQDKVML 240 LGHDDGYVRD QNMKVTVVYN HFGPNCNQRM PRIRHGYAHV ANNLYLGWVQ YAIGGSMGPS 300 LKSEANLFIA PTIGSKEVTW RKSNHNNGDT WEFHSVKDAF ENGASFTVTK GGRVPKPNYS 360 NEQYFKVVDV NFVRSLTRSS GILGCSKTSV C* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-26 | 128 | 308 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-52 | 130 | 308 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-62 | 125 | 311 | 196 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 71 | 391 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 40 | 391 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 40 | 391 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 40 | 391 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 17 | 318 | 13 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 41 | 383 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 41 | 383 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-16 | 104 | 310 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00000000000008 | 108 | 315 | 61 | 283 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.0000000000002 | 101 | 308 | 102 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
