| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma01g38540.1 |
| Family | PL1 |
| Protein Properties | Length: 354 Molecular Weight: 39888.8 Isoelectric Point: 9.7083 |
| Chromosome | Chromosome/Scaffold: 01 Start: 50612386 End: 50613848 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 110 | 292 | 0 |
| VWITFQRDMHIKLERPLLISSFTTIDGRGVNVHIADNACIMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVIWIDHNTLYNCQDGLLDVTRGSTDVTI SNNWFRDQDKVMLLGHDDGYVRDQNMKITVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 354 Download |
| MVSHGINSIL WHFVLVIVIV ALFTPTLSAA KQSKINGLKM NVIDRCWRLN PEWRRHRPQL 60 ATCSVGYTGK MTNNIGDDLI HYKVIDPSDD PINPKFGTLR YGASVIQGKV WITFQRDMHI 120 KLERPLLISS FTTIDGRGVN VHIADNACIM IFKATNIIIH GIRVHHCKPQ APGIVMGPEG 180 KVIWIDHNTL YNCQDGLLDV TRGSTDVTIS NNWFRDQDKV MLLGHDDGYV RDQNMKITVV 240 YNHFGPNCNQ RMPRIRHGYA HVANNLYLGW VQYAIGGSMG PSLKSEANLF IAPTTGSKEV 300 TWRKNSHKNG DIWEFHSVRD AFENGASFAV TKGGRVPKPN YSKEQCFKVV NVNS 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-27 | 128 | 290 | 177 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-44 | 130 | 290 | 181 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-59 | 125 | 293 | 181 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 71 | 354 | 1 | 301 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 40 | 354 | 19 | 350 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 40 | 354 | 1 | 335 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 40 | 349 | 1 | 328 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 9 | 300 | 2 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 41 | 354 | 2 | 334 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 41 | 354 | 2 | 334 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000004 | 183 | 292 | 127 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 0.000000000000007 | 133 | 296 | 82 | 259 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmv_A | 0.000000000000007 | 133 | 296 | 82 | 259 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
