| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.003G218200.2 |
| Family | PL1 |
| Protein Properties | Length: 283 Molecular Weight: 31483.8 Isoelectric Point: 10.2946 |
| Chromosome | Chromosome/Scaffold: 03 Start: 21432897 End: 21434384 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 39 | 201 | 0 |
| DVVMYKATDVIIHGLRIHHCNAQGPSTVMGPDGKQMQLGQMDGDAIRLVSASKIWIDHNTLYSCQDGLLDVTRGSTFVTVSNNWFRDQDKVMLLGHDDGF LRDKNMKVTVAFNRFGPNCNQRMPRIRHGYAHVANNLYRGWEQYAIGGSMSPSIKSESNYFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 283 Download |
| MNAIDQCWKP SPNWRRSRQQ LASCSVGFAG KMTNNVGRDV VMYKATDVII HGLRIHHCNA 60 QGPSTVMGPD GKQMQLGQMD GDAIRLVSAS KIWIDHNTLY SCQDGLLDVT RGSTFVTVSN 120 NWFRDQDKVM LLGHDDGFLR DKNMKVTVAF NRFGPNCNQR MPRIRHGYAH VANNLYRGWE 180 QYAIGGSMSP SIKSESNYFI APTSGKKEVT WRNGIGGKSK PWNFYSIGDL FTNGASFFQT 240 GRRGMAKPNY NKEQSFKVGD AKYVKALTSS AGALKCSRTS RC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-26 | 74 | 199 | 140 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-53 | 41 | 199 | 167 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-60 | 42 | 202 | 170 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 37 | 282 | 76 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0.000000000000001 | 1 | 47 | 1 | 47 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002299118.1 | 0 | 40 | 282 | 110 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 2e-22 | 1 | 47 | 1 | 47 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 41 | 282 | 111 | 352 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 35 | 274 | 103 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_B | 0.0005 | 2 | 47 | 2 | 47 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 35 | 274 | 103 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0.0005 | 2 | 47 | 2 | 47 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-17 | 36 | 200 | 81 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DT575750 | 225 | 53 | 277 | 0 |
| FG478648 | 201 | 86 | 283 | 0 |
| FG474249 | 201 | 86 | 283 | 0 |
| FD757999 | 193 | 37 | 229 | 0 |
| FG468635 | 191 | 66 | 255 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |