| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G197300.1 |
| Family | PL1 |
| Protein Properties | Length: 351 Molecular Weight: 39009.3 Isoelectric Point: 9.8699 |
| Chromosome | Chromosome/Scaffold: 10 Start: 55802506 End: 55803796 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 101 | 299 | 0 |
| ITFKNSMTITLQRPLLLSSFTAIDGRGVDVHITGAGCLLVYQATDIIIHGLRIHHFKAQPPSTVMGTNAKVIPLGQMDGDAIRLVTARKVWIDHNTLYEC QDGLLDVTRGSTSITVLNNWFRNQDKVMLLGHDDGHLRDKNMKATVIFNHFGPNCNQRMPRVHHGYAHVANNFYQGWEQYAIGGSMSPSIKSEANFFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 351 Download |
| MATTLSCCFT LALFMVILMA SPSSSLANLN VIDKCWRGNP LWRSQRQQLA KCSVGFVGKM 60 INNIGKDVVK YKVIDPSDDP LSPKSGTLRY GTTMIKGKLW ITFKNSMTIT LQRPLLLSSF 120 TAIDGRGVDV HITGAGCLLV YQATDIIIHG LRIHHFKAQP PSTVMGTNAK VIPLGQMDGD 180 AIRLVTARKV WIDHNTLYEC QDGLLDVTRG STSITVLNNW FRNQDKVMLL GHDDGHLRDK 240 NMKATVIFNH FGPNCNQRMP RVHHGYAHVA NNFYQGWEQY AIGGSMSPSI KSEANFFVAP 300 TDVGNKEVTW RKGEKGLWKF YLVRDVVDAG FIKKLTSESG VLRCSRSLIC * 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 9.0e-26 | 85 | 297 | 231 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-54 | 119 | 297 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-62 | 107 | 300 | 205 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_196490.1 | 0 | 60 | 313 | 1 | 253 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267384.1 | 0 | 24 | 350 | 14 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 29 | 350 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 29 | 350 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 9 | 308 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 30 | 313 | 2 | 284 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 30 | 313 | 2 | 284 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 9e-17 | 115 | 319 | 128 | 354 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 4e-16 | 93 | 299 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.0000000000004 | 180 | 298 | 144 | 288 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
