| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G197100.1 |
| Family | PL1 |
| Protein Properties | Length: 223 Molecular Weight: 24998.9 Isoelectric Point: 9.9302 |
| Chromosome | Chromosome/Scaffold: 10 Start: 55794567 End: 55795346 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 41 | 215 | 0 |
| WITFKNSMTITLQRPLLLSSFTAIDGHGVDVHMNGAGCLLVFQATDIIIHGLRIHHCKAQPPSTVMGPNAKVIPLGQMDGDAIRLVTARTVWIDHNTFLL DVTRGSTNITVSNNWFRNQDKVMLLGHDDGHLRDKNMKVTVIFNHFEPNCNQRMPRVRHGYAHVANNFYQGWEQK | |||
| Full Sequence |
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| Protein Sequence Length: 223 Download |
| MINNIGKDIV KYKVIDPSDD ALSPKSGTLR YGTTMIKGKV WITFKNSMTI TLQRPLLLSS 60 FTAIDGHGVD VHMNGAGCLL VFQATDIIIH GLRIHHCKAQ PPSTVMGPNA KVIPLGQMDG 120 DAIRLVTART VWIDHNTFLL DVTRGSTNIT VSNNWFRNQD KVMLLGHDDG HLRDKNMKVT 180 VIFNHFEPNC NQRMPRVRHG YAHVANNFYQ GWEQKTLRQC PL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-24 | 19 | 211 | 215 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-44 | 60 | 214 | 169 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-48 | 48 | 213 | 183 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 1 | 217 | 1 | 223 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_196490.1 | 0 | 1 | 214 | 1 | 220 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002299118.1 | 0 | 1 | 217 | 32 | 254 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 217 | 32 | 254 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 217 | 60 | 282 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 6 | 212 | 35 | 248 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 6 | 212 | 35 | 248 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.00000000000001 | 56 | 210 | 128 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.0000000000002 | 34 | 210 | 42 | 214 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 0.0000000001 | 63 | 210 | 82 | 224 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR808308 | 226 | 1 | 213 | 0 |
| FD757999 | 165 | 54 | 212 | 0 |
| DT575750 | 127 | 92 | 212 | 0 |
| EL457563 | 219 | 6 | 217 | 0 |
| BQ871631 | 209 | 12 | 213 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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