| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10006459m |
| Family | PL1 |
| Protein Properties | Length: 375 Molecular Weight: 40373.7 Isoelectric Point: 9.9348 |
| Chromosome | Chromosome/Scaffold: 7 Start: 14288462 End: 14290265 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 106 | 293 | 0 |
| LWITFARSMVIVLKVELSVNSYKTIDGRGAKVEIANGPCVRMRLVKHVIIHGISIHDCKPGPKEGPDGDAIRVFQSSHIWIDHCFLSRSQDGLIDVISSS TAVTISNNKFTNHDKVILLGHDDKFTGDKVMKVTVAFNYFGPGLIERMPRVRRGYAHVANNRYDKWKMYAIGGSADPIIFSEGNYFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 375 Download |
| MDSLVITISL VFAILASLLV ESSAHNHSDD GYTLATATLN PIDACWRKNP KWSTNRQALA 60 HCAVGFGKAA LGGKAGAIYV VTSPLDDPVK PKPGTLRFGV IQSKPLWITF ARSMVIVLKV 120 ELSVNSYKTI DGRGAKVEIA NGPCVRMRLV KHVIIHGISI HDCKPGPKEG PDGDAIRVFQ 180 SSHIWIDHCF LSRSQDGLID VISSSTAVTI SNNKFTNHDK VILLGHDDKF TGDKVMKVTV 240 AFNYFGPGLI ERMPRVRRGY AHVANNRYDK WKMYAIGGSA DPIIFSEGNY FVAPDNKNAK 300 EVTKRVGSAA EIKKWKWGTS KDVFLNGAFF VPSGGPAVKP AYAKGEAFPV APGSLVPSLT 360 ASAGPLNCVV GKIC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR04247 | NosD_copper_fam | 0.003 | 92 | 217 | 161 | + nitrous oxide reductase family maturation protein NosD. Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase. | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-6 | 94 | 248 | 167 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG3866 | PelB | 3.0e-32 | 119 | 291 | 187 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-60 | 119 | 291 | 202 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-79 | 114 | 295 | 193 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28424.1 | 0 | 22 | 374 | 21 | 368 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_172656.1 | 0 | 1 | 374 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_174324.1 | 0 | 22 | 374 | 21 | 368 | pectate lyase family protein [Arabidopsis thaliana] |
| Swiss-Prot | O65388 | 0 | 1 | 374 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
| RefSeq | XP_002518442.1 | 0 | 39 | 374 | 43 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 40 | 364 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 40 | 364 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-22 | 113 | 293 | 55 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 3e-17 | 119 | 291 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.00000000000003 | 129 | 291 | 82 | 246 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
