| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.005G064500.1 |
| Family | PL1 |
| Protein Properties | Length: 296 Molecular Weight: 33115.8 Isoelectric Point: 10.0084 |
| Chromosome | Chromosome/Scaffold: 05 Start: 4646803 End: 4648285 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 58 | 214 | 0 |
| GKMANNVGRDVILYKATDVIIHGLRIHHCKAHSQMDGDAIRLVSASKVWIDHNTLFSCQDGLLDVTRGSTFVTVSNNWFRDQDKVMLLGHDDGFLRDKDM KVTVAFNHFGPNCNQRMPRVRHGYAHVTNNLYQGWEQYAIGGSMSPSIKSESNYFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 296 Download |
| MAVLSHFVVV LSFVSLSFFP NACLAASEMN AIDQCWKLNT IWRRSRQQLA TCSVGFAGKM 60 ANNVGRDVIL YKATDVIIHG LRIHHCKAHS QMDGDAIRLV SASKVWIDHN TLFSCQDGLL 120 DVTRGSTFVT VSNNWFRDQD KVMLLGHDDG FLRDKDMKVT VAFNHFGPNC NQRMPRVRHG 180 YAHVTNNLYQ GWEQYAIGGS MSPSIKSESN YFIAPKSGKK EVTWRNGIYE KSKPWNFYSV 240 GDLFTNGASF FQSGRRGMAR PNYTKEQSFK VGDAKSVKTL TSSAGALKCS RTLRC* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-27 | 58 | 212 | 169 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-53 | 69 | 212 | 160 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-64 | 70 | 216 | 156 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 68 | 295 | 79 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0.000000000000009 | 29 | 75 | 1 | 47 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002299118.1 | 0 | 68 | 295 | 110 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 5e-17 | 29 | 75 | 1 | 47 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 69 | 295 | 111 | 352 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 63 | 287 | 103 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_B | 0.002 | 30 | 75 | 2 | 47 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 63 | 287 | 103 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0.002 | 30 | 75 | 2 | 47 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3vmw_A | 5e-19 | 47 | 279 | 79 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
