| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr6g077900.1 |
| Family | PL1 |
| Protein Properties | Length: 286 Molecular Weight: 32420.3 Isoelectric Point: 9.346 |
| Chromosome | Chromosome/Scaffold: 6 Start: 17434731 End: 17436153 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 41 | 223 | 0 |
| WITFKKDMNIKLMKPLLISSFTTIDGREFNVHIGDNACLMIFKATNIIIHSIRIHHCKAQAPGMVMGLVTVSKIWIDHNTLYNCEDGLLDVTRGSANVTI SNNWFREQDKVILLGHDDGYVRDINMKVTFVYNHFGPNCNQRMPRIHHRYAHVANNLYLGWMQYVIDGSMGPSLKSESNLFIA | |||
| Full Sequence |
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| Protein Sequence Length: 286 Download |
| MTNNIGKGFI HYKVTDPNDD PINPQSDTLR YGASVIQGKV WITFKKDMNI KLMKPLLISS 60 FTTIDGREFN VHIGDNACLM IFKATNIIIH SIRIHHCKAQ APGMVMGLVT VSKIWIDHNT 120 LYNCEDGLLD VTRGSANVTI SNNWFREQDK VILLGHDDGY VRDINMKVTF VYNHFGPNCN 180 QRMPRIHHRY AHVANNLYLG WMQYVIDGSM GPSLKSESNL FIAPKCGSKE VTWRKIGHTN 240 GDKWQFHSVR DAFENGASFE VTKGSVCQSQ IIAKNKFFKL LMLNQ* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-20 | 58 | 221 | 179 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-40 | 60 | 221 | 180 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-53 | 47 | 225 | 192 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 1 | 266 | 1 | 283 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 266 | 50 | 332 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 284 | 32 | 334 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 259 | 32 | 307 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 231 | 60 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 6 | 280 | 35 | 329 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 6 | 280 | 35 | 329 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3vmw_A | 0.0000000000005 | 75 | 232 | 93 | 257 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3vmv_A | 0.0000000000005 | 75 | 232 | 93 | 257 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
| PDB | 3zsc_A | 0.000000000005 | 114 | 278 | 127 | 285 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 188 | 92 | 262 | 0 |
| FD757999 | 215 | 54 | 252 | 0 |
| DR808308 | 225 | 1 | 201 | 0 |
| EL457563 | 249 | 6 | 234 | 0 |
| FG470156 | 173 | 90 | 262 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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