| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.004G231500.1 |
| Family | PL1 |
| Protein Properties | Length: 379 Molecular Weight: 42175.5 Isoelectric Point: 9.9882 |
| Chromosome | Chromosome/Scaffold: 04 Start: 56856358 End: 56857588 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 100 | 300 | 0 |
| WITFKNSMTITLQRPLLLSSFTAIDGRGIDVHITGVGCLLVYQVTDIIIHGLRIHHCKAQPPSTVMGPNAKVIPLGQMDGDAIRLVTARKVWIDHNTLYE CQDGLLDVTRGSTNITISNNWFRNQDKVMLLGHDDGHLRDRNMKVTVIFNHFGPNCNQRMPRVRHGYAHVANNFYQGWEQYAIGGSMSPSIKSEANFFVA S | |||
| Full Sequence |
|---|
| Protein Sequence Length: 379 Download |
| MATILSRCLT WALFMVFLMA SFSSSLANMN VIDKCWRGNP FWQSHRQQLA KCSVGFVGKM 60 INNIGKDVVK YKVTDPSDNP LSPKPGTLRY GTTMIKGKVW ITFKNSMTIT LQRPLLLSSF 120 TAIDGRGIDV HITGVGCLLV YQVTDIIIHG LRIHHCKAQP PSTVMGPNAK VIPLGQMDGD 180 AIRLVTARKV WIDHNTLYEC QDGLLDVTRG STNITISNNW FRNQDKVMLL GHDDGHLRDR 240 NMKVTVIFNH FGPNCNQRMP RVRHGYAHVA NNFYQGWEQY AIGGSMSPSI KSEANFFVAS 300 NDVGNKEVTW RKGEKGLWKF YSVGDVFKNG ASFSKQTGVG GAKPNYNREQ DFKVVDAGSV 360 KELTSESGVL RCSRSLTC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-27 | 89 | 297 | 227 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-57 | 119 | 297 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-66 | 107 | 301 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 60 | 378 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 24 | 378 | 14 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 29 | 378 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 29 | 378 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 9 | 308 | 8 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 30 | 370 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 30 | 370 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 6e-19 | 115 | 326 | 128 | 361 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 3e-16 | 93 | 299 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.000000000000007 | 180 | 301 | 144 | 291 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
