| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma13g21880.2 |
| Family | PL1 |
| Protein Properties | Length: 371 Molecular Weight: 41349.8 Isoelectric Point: 10.122 |
| Chromosome | Chromosome/Scaffold: 13 Start: 25397746 End: 25399241 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 109 | 308 | 0 |
| WITFQRDMHIKLERPLLISSFTTIDGRGVNVNIADNACLMIFKATNVIIHGIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYN CQDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRDQNMKVTIVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 371 Download |
| MAAHSTNHIL WCFVLVIIVV ALYTPNISAA KQSKINGLNV IDQCWRLNPK WRRHRPQLAT 60 CSVGYTGKMT NNIGKDLIHY KVIDPNDDPI NPKPGTLRYG ASVIQGKVWI TFQRDMHIKL 120 ERPLLISSFT TIDGRGVNVN IADNACLMIF KATNVIIHGI RVHHCKPQAP GIVMGPEGKV 180 IPLGHVDGDA IRLVTASKIW IDHNTLYNCQ DGLLDVTRGS TDVTVSNNWF RNQDKVMLLG 240 HDDGYVRDQN MKVTIVYNHF GPNCNQRMPR IRHGYAHVAN NLYLGWVQYA IGGSMGPSLK 300 SEANLFIAPT IGSKEVTWRK STQKNGNTWE FHSVKDAFEN GASFTITKGG RVPKPIIARN 360 NTLKLLMSNL * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-27 | 126 | 306 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-52 | 128 | 306 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-64 | 115 | 309 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 69 | 355 | 1 | 286 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 33 | 355 | 14 | 335 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 38 | 369 | 1 | 334 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 38 | 365 | 1 | 328 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 14 | 316 | 10 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 39 | 369 | 2 | 333 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 39 | 369 | 2 | 333 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 105 | 308 | 45 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00000000000001 | 106 | 313 | 61 | 283 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.00000000000002 | 99 | 365 | 102 | 382 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
